LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl02g00887	ATGGTTGAGAGAGTAGAGATCTCAGATGGAGAAAACAGCATTGGGAGCGACACTCAAGACCAAAACACATCTCAGAAGTGGTCTTCCTTCGACTTGAACGAAAACGCCATGAGTGAAGAGGATGACAGTACTAATACTGATCAGGTAGCAAATGCCACGGTTGAGGAAGATGAGACTGTGACAAGAGGGAATTCAAGTGATAACACCACCACCAATGAAGGCAGTACTGAAAGAACTACTACTGTTAGACAATACGTTCGATCGAAAATGCCGAGGCTCCGTTGGACTCCTGATCTCCATCTTTCTTTTGTGCATGCAGTGGAAAGGCTGGGTGGGCAAGAGAAAGCAACTCCCAAATTAGTTCTTCAGCTAATGAATGTGAGAGGACTTAGCATTGCTCATGTAAAAAGCCACTTGCAGATGTATCGAAGTAAGAAGCTCGACGAATCTGGGCAAGTTTTGTCTCAAACAAATAGGCCAATCCAAGGAAGTACAGACATGTTCTACCATAGAACCAGTCCTGATCAACACTTTAGAATGGACAGAAGGAGCTTTTTTGTTGGCAAGAACATTCATGAGACTAATCATTTTCGGACTCTTTCACAGTGTTCTCTCTCCCAACAAGCATTTGATCCCAAAGCTAGCTCTTCAAGGCACCAAGAGTGGGCTTTCAATCAACATGCTATGATAAGGCCAATTTCACTCCCAACCAAAGATCCGGGTCTAGCCAAGGGTCAGTTTGGTGACATGATCATCCAAAATGATGAAAAGCCATCGACTTCATACTTATTTGATGCAGGGAAGGCAATCACTGTAAATGGGCCTATTAGACCTAGCAAATTTCTCGAAGAAAAGAAGTGGCCTCCATGTGAAATGATTTACCGTCGCGGAAGGGACAGGAAGGTTCCAATGAACATTGCTTGGGCCAGTAGTAGCTCCCAATATCTAGCCCACCAAATTCGTTCCACACCAATGTGTGTCGATGCGACTAACAGTACCATGCGACCTTCTGGGTGGAACCTTAACACCAATACCAGCAACAAACAATTTCAATCCAACTTTTGTGATTCCATAATTCCCTCTGATAACTTTGAACCTGAGTTTAAGTTTCAAAGGTTGCCAACAGATCGACACAAACAAATATCAGAAGAGATGTTGGAAATAGAAGAGAAAAGTAGAAGTAGTTCAGAGAAGAAGATGAAAGAGAAGGAATGGTTGCCAAATTTACAGCTGAGTTTGAGCCACAACTTCGGAAACGACGATGGAAAGAAGGCTGGTGATAGCACAAAAGAAATTAACACCATGCTTTCTCTATCGTTGCTCCCCTCGTCGAGGCAACGAAAAGCACAACTGAGTGAAAAGCACAAAGATATTTCCCAAAATAAAACTTGGTCTTTACAAACAAATTGCAGCAAGGCAACATTGAGGCTGAGTACTTAG	1440	0.4292	MVERVEISDGENSIGSDTQDQNTSQKWSSFDLNENAMSEEDDSTNTDQVANATVEEDETVTRGNSSDNTTTNEGSTERTTTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSQTNRPIQGSTDMFYHRTSPDQHFRMDRRSFFVGKNIHETNHFRTLSQCSLSQQAFDPKASSSRHQEWAFNQHAMIRPISLPTKDPGLAKGQFGDMIIQNDEKPSTSYLFDAGKAITVNGPIRPSKFLEEKKWPPCEMIYRRGRDRKVPMNIAWASSSSQYLAHQIRSTPMCVDATNSTMRPSGWNLNTNTSNKQFQSNFCDSIIPSDNFEPEFKFQRLPTDRHKQISEEMLEIEEKSRSSSEKKMKEKEWLPNLQLSLSHNFGNDDGKKAGDSTKEINTMLSLSLLPSSRQRKAQLSEKHKDISQNKTWSLQTNCSKATLRLST*	480

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl02g00887	479	Pfam	Myb-like DNA-binding domain	93	143	IPR001005	-
	Eupl02g00887	479	MobiDBLite	consensus disorder prediction	42	82	-	-
	Eupl02g00887	479	SUPERFAMILY	Homeodomain-like	89	145	IPR009057	-
	Eupl02g00887	479	FunFam	Myb family transcription factor	89	147	-	-
	Eupl02g00887	479	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	87	147	IPR017930	-
	Eupl02g00887	479	Gene3D	-	90	147	-	-
	Eupl02g00887	479	MobiDBLite	consensus disorder prediction	1	82	-	-
	Eupl02g00887	479	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	91	146	IPR006447	GO:0003677
	Eupl02g00887	479	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE	67	210	IPR046955	GO:0003700
	Eupl02g00887	479	MobiDBLite	consensus disorder prediction	11	34	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl02g00887	Eupl-Chr2	11764907	11768402	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl02g00887	79	150	G2-like Transcription Factor Family	AT2G42660	79.167	2.47e-34	127

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-G2-like	Eupl02g00887		Myb_DNA-binding	1.4e-06	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl02g00887	-		-	tss:122651014	438.343