Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00859 ATGTCGCATTCTGGGAAACCCATATCTGAAACAGGGATTGATTACCTATCCGATCGCCTTCGTGGGGCGCTGAGTTGTGAGAACAACAAGCCAGATTACAAAGAACTCAATCTGGGTTCGCCGGTTTCTCCTCTACGGACCACCCGTCGTGGTGCTGGTGCCGCCGCCAGTGGTCTCACCACCACTAGCAGCAGCTCTAGCTCGTCTGGTTCGGTTTCTGGGAAAACTGGGAACAACCCAGTTGTCAAAAGATCTGATGGAGGTGGGAATAATCATTCCGGCGAGCTTTCGGGGTCGAGCGAAAGCAGTCCGACTGCTGCAGAGAGTGTCCGATCCGCCGGTGCGATTCGTAATTCCAAGCCTAGTCATAGGAGATCGAATTCGAGTGGCGGTCCGTTAATTAATTCAGGCGGAAGCGTCAGCGCTGGTAGCGGTGGGGGAGGAAGTTCGGTTAATTCTCCGTCTGTCAATACTCTTCCGACTGGGAACATTTGCCCTTCTGGGAAGATTTTGAAGACGGGCATGGCACACCGGAGCTCAGCGCGAAGCGATGTTTTGGGGTCGGGGACGGGGAATTACGGGCACGGAAGTATAATGCGGGGCACCGTTGCAGGGAAATTTGGTCGCAGTGGAGGTGGAGGTGGAGGTGAAACAAGTGGGTGCAATGTGACAGGGAACATTCAATTCACGGGGGATTCGGTAATGGTGAAGCAGACGATGACGAGTTTAGATCCTGAGGAGGTGAAGAGGGCTGGGAATGAGCAGTATAAAAGGCGCAATTTCTTGGAAGCTTTGTGTTTGTATGATCGGTCGATTGCTATCTCGCCTGACAATGCAGCATATCGGAGCAACAGGGCAGCGGCATTGACGGGGCTTGGGAGATTGGCGGAGGCGGTGAGGGAGTGCGAGGAAGCGGTAAGGTTGGATCCGGGGCATTGGAGGGCTCATCAGCGGTTGGGGTCTCTGCATCTAAGGCTAGGGCAGGTTGAGAATGCCCGTAGGCATCTTTGTTTTGGTGGACAGAAGCCAGATCCAGCTGAGTTGCAAAAGTTGCTGGCAGTGGAGAGGCATATGATCAGATGTGCTGATGTCCGGAAGATTGGTGATTGGAAGAGTGCATTGAGGGAATGTGATGCTGCCATTGCTGCAGGAGCAGAGTCTTCTCCTCAGCTCTTTGCTTGTAGAGTAGAAGCCCATCTGAAGCTCCATGAACTAAAGGATGCAGACTTGGGCCTAGCAAGCATACCCAAATTCGAACCATCTCCCCCTTCCTGCTCACAGTCCAAGTTCTTTGGAATGCTCTCTGAATCCTACCTCTTCTTTGTTCGAGCTCAGGTTGAGATGGCATTGGGAAGGTTTGAGAATGCAGTTACGACTGCTGAGAAGGCTGCTCAGATTGATTCCCGAAACATTGAAGTTGCGGTGATGATGAAAAATGTGAGGTTGGTGGCAAGAGCCCGTCTCCGCGGTAATGATCTCTTCAATTCCGGAAAGTTTGCTGACGCCTGCTCTGCTTATGGGGAAGGCCTGAAGTGCGATCCGTCCAACTCTGTTCTCTATTGCAATAGAGCAGCTTGCTGGTCTAAGCTTGGACAATGGGAGAGATCCGTCGAAGACTGTAATCAGGCTCTCAGGATCCAACCAAATTACACCAAGGCCCTTCTTCGACGGGCTGCATCCAATGGCAAGCTTGAACGGTGGGCTGAATCTGTGAAAGATTATGAAGTCTTGAGGAGGGAACTTCCGGGGAACAATGAAGTAGCAGAAGCTCTATTTCATGCCCAAGTGGCATTGAAGAAATCACGTGGGGAGGAAGTCTCCAATTTGAAGTTTGGCGGCGAAGTGGAGGAAATCTCGGGACTTGATCAGTTTAGAGCTGCAATAGCATCACCTGGTATTTCAGTTGTCTATTTCAAGGCTGCCTCAAACAAGCAGTGTGAGCAGATATCCCTGTTCATGGACACATTATGCGTCCGGTATCCATCTGTGAATTTTCTCAAGGTGGATATCGAGGAGAGTGCAGCAGTAGCCAATGCTGAGAACGTGAGGATTGTTCCAACATTCAAGATTTACAAGAACGGGAGCAGGGTAAAGGAGATGATCTGCCCAAGCCACCAGGTGTTGGAGTACTCGGTGAGGCATTACAGTCTCTAG 2154 0.5125 MSHSGKPISETGIDYLSDRLRGALSCENNKPDYKELNLGSPVSPLRTTRRGAGAAASGLTTTSSSSSSSGSVSGKTGNNPVVKRSDGGGNNHSGELSGSSESSPTAAESVRSAGAIRNSKPSHRRSNSSGGPLINSGGSVSAGSGGGGSSVNSPSVNTLPTGNICPSGKILKTGMAHRSSARSDVLGSGTGNYGHGSIMRGTVAGKFGRSGGGGGGETSGCNVTGNIQFTGDSVMVKQTMTSLDPEEVKRAGNEQYKRRNFLEALCLYDRSIAISPDNAAYRSNRAAALTGLGRLAEAVRECEEAVRLDPGHWRAHQRLGSLHLRLGQVENARRHLCFGGQKPDPAELQKLLAVERHMIRCADVRKIGDWKSALRECDAAIAAGAESSPQLFACRVEAHLKLHELKDADLGLASIPKFEPSPPSCSQSKFFGMLSESYLFFVRAQVEMALGRFENAVTTAEKAAQIDSRNIEVAVMMKNVRLVARARLRGNDLFNSGKFADACSAYGEGLKCDPSNSVLYCNRAACWSKLGQWERSVEDCNQALRIQPNYTKALLRRAASNGKLERWAESVKDYEVLRRELPGNNEVAEALFHAQVALKKSRGEEVSNLKFGGEVEEISGLDQFRAAIASPGISVVYFKAASNKQCEQISLFMDTLCVRYPSVNFLKVDIEESAAVANAENVRIVPTFKIYKNGSRVKEMICPSHQVLEYSVRHYSL* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00859 717 SUPERFAMILY Thioredoxin-like 520 714 IPR036249 -
Eupl02g00859 717 ProSiteProfiles TPR repeat profile. 517 550 IPR019734 GO:0005515
Eupl02g00859 717 Pfam Tetratricopeptide repeat 519 550 IPR001440 GO:0005515
Eupl02g00859 717 SUPERFAMILY TPR-like 244 575 IPR011990 GO:0005515
Eupl02g00859 717 MobiDBLite consensus disorder prediction 25 163 - -
Eupl02g00859 717 MobiDBLite consensus disorder prediction 54 109 - -
Eupl02g00859 717 FunFam TPR repeat-containing thioredoxin TTL4 609 716 - -
Eupl02g00859 717 Gene3D Tetratricopeptide repeat domain 244 603 IPR011990 GO:0005515
Eupl02g00859 717 SMART tpr_5 437 470 IPR019734 GO:0005515
Eupl02g00859 717 SMART tpr_5 245 278 IPR019734 GO:0005515
Eupl02g00859 717 SMART tpr_5 483 516 IPR019734 GO:0005515
Eupl02g00859 717 SMART tpr_5 551 584 IPR019734 GO:0005515
Eupl02g00859 717 SMART tpr_5 517 550 IPR019734 GO:0005515
Eupl02g00859 717 SMART tpr_5 279 312 IPR019734 GO:0005515
Eupl02g00859 717 Pfam Tetratricopeptide repeat 251 311 - -
Eupl02g00859 717 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 25 714 IPR044534 -
Eupl02g00859 717 Pfam Thioredoxin 622 702 IPR013766 -
Eupl02g00859 717 SUPERFAMILY TPR-like 359 479 IPR011990 GO:0005515
Eupl02g00859 717 CDD TRX_family 622 703 - -
Eupl02g00859 717 Gene3D Glutaredoxin 609 716 - -
Eupl02g00859 717 MobiDBLite consensus disorder prediction 115 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00859 Eupl-Chr2 11372669 11377020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00859 482 627 U-box Gene Family AT3G07370 26.776 2.73e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00859 - - nnu:104613111 1059.67