Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00853 ATGTTATTTGACGAAGAAATCGAGGGTTTGTTTGATGATGGCTTTGAAGGGTCAAATGAGGAGCGTCGGATTTTCATGGAGGTTTTCCGTGGAAACGATGCTGGAAGCATTAGTAAAAGGTGTCTCGTTACTGGAGCAATTAACTTTGAAGCTGATGACAATAAGCACACAAATGCATTATTCAATTTGACTAGTGAAAATTCATTGCTGACGAGTCATTCCTCCACAAAGGATTCATATGTGGAGGATTCTTGTACTGTAAATGAGGCGTCTGGACATGTGAAGCAGAATCATGAAGGAATAAGCAGAGTAATTGCTGGATCAGGGTGTGTTCAGGAAAGATGTACAGCTTCGGTAGGAAGGGATGGCCGTGAAGCTAATGTTAAGCGAATGAAGTGGTCAGTTGATGAACTTGCTGATCCTAGGCATAAAAGTTCAACTGATGATTTGCCTGGTGTGAAGAAGGATTTGATTCAGTTGGACTTGTTGAAAGAAGTTGTTCCTGTTACACCCACTCCAGATTCATACCGCATTGGTCAAACAATAACATGCCACTTGGTTGAATCTTCCAGTGAGGGCATTATATCTAGATGTTATCTGCTTAAGCACCATAGAGAAGTGGACACCGGAGGTCACGTGGATGATGGAGAAGCCTCTAAAAGTAAACTATCAAGCTTATTTGGAATAGATGGAAATGAAGTTATTGAAAGTAAACCTATTATATCACCAGTTTCTCAGGAGAGCATTGCACCCAGGCTTTTGGTTGGAGGTGCACCAATTGCTCATAAATCTGGAGCTTTAATAGCTGCCAAAGAACAGTCTCAGGAATCTGTTCTTTTAAACTCAGATATTGTTAATATGACTTGGAAGAGAGACTCTACAAAAGATCTTCGCGCGCGTCTCCGCTGCCGTATTAATCATTTACTTATGGCCACGGGCTGGCGTCTTGAGAAGCGGAAAAGGGGCACCAGGGTATATATGGACTCTGTTTATATATCACCTTGGGGAAAGGTTATTCGTGAATTGCATAAAGCTTGGAGGTCATGTGGTGAGAGTTTATTTGCCGATGGATACAAATTGATGCAGCAAGAAAATGGGAGGCAGTGGGTTGCTATCAGAGAATTTTGGTCTGACTTATCAGATACATTAATGCATATTGAGAAAGAGATGCAACAGTTGGAAACTTCTATTTCTCTGGCTGATCAATGGAGTCTTCTAGATCCCTTTGTTACGGTGATTTATATTGATAGGCAAATTGGTGCCCTGAGAGAGGGAAGGCCAGTCAAAGCAGTCAGAACTGCTTTGTTTGATTTGAGCAAGGAAAAGGATACTTTGGCAGTGAAAAATGTTGATGGAATCAGAAACCAGCTTAAGGGATTATGTGGGGATCAAATAGGCAGCTTGACTGAGAGTTTGGTATCAGCCTGTGAATCAGGTAGTACATGTATTCAGGTGGATACTTGCCTTCATGATACACCTTTGACTGCTGAAATTGCAGGGAGAGTTGCTGATGGTAATAGACATGTTTGCAATGAGCAATATAGCAATGGAAGTTTCTCTATCTTTGGTCAACAGAGACAGGGAGGGGCAGTGAAAGCTTTGAAAGGTATATCGATTTATTTGAAAGAGGAAAAAAGTGTATTTGTGGAAGCAAATATCATTGATGCTACTGGAAATCATCTTGTGGGAACCTTTAGGAACCAAATAGGCAGCTTGAATCTTGGTTCGGAACTGGCTCGCGGGTCAGATGTGAAATGTATCCAAGAGGATACTTGTCTGCATGATGCTCCGGCCACTTCTGGAAGCGTAGTTACAGTGGTAGAAGGCACTGGAAATGTACCCCCCCAGCAAGACAGTGATGGAAGTCTCTCAACCTTTGGTGAACATAGTTCTGGACGGATAGAGGTAGGGACTGTAACTGCTATCAAAGGTGTATCAGTGGATGTTGGTGAGGAAAATGGTACAGAATTTAAAGGTGAGAGTATGGAAAGGGTAGGAAATCAGCTTCAAGGATCCTTTCAGGACCAATTAGGCTGCTTAAATGAGTTTTTGGCACCGGCACGTGACTCGGATAGCACATCTGCACAGGTGGATACCTGCCTGCATTGTACTCCCTTAGTTGCTGAAGGTGTTGAGAGAGTGGTTAAGGGGATGGAAAACGCTTGTAATCAGAAAGGCAACCGTGAAAGCTCCTCAATCCTTTGCCAACAAAGCTGTCAAAATGAAGATCTTAAAGTCAAGTGCAGGTCCGGAGGATTAAACAGGCATGATGGAGAGGTATGCAAAGGAAACATTAAAACCCAGGCAAGGTGCATAGGAAATGGATCTGACGATGGAGACCTGAATAGCATGCAGTGCAACTTCTTAGCAGGTCAGCCTAAGAATTCAGCGGTATTATTAAGTGATGCAAATGTTGTTACGACAGAGTCAACTTGTTCTCAGCTAGAAGGCTCCCTGGCAAATGATTCCTTTGTCCAAGATTCTGCAACAGTGCATTCTGAACAACCAAAATCTCAGGATCTAAAGAAAACTCAAAGTATTAATATGGAAGAAACTATTGAATGCATGCCACAAAAGAAACTAGTTTGCTTCGATTTGAATGTGGAGATCAATGGGATGGACACACTGAAGGAAGTAGTGACGGAAGGAACACGTGAAATTCTTTTACCTTCTAGGCACACCAAAGAGTTGATAACAGGAAGTCAACTATGCGGGCAATCTGCAAATGAACAGCAGAAGCTGTTTCTTTATTCTCAAGAAAAGGTGCCCCATGGAATGATAGAGCACAGTAAGGAAGATGGGCTTCCTCAGGAAGCTGTCAAAGATGTTGCCATGCATTATGAAACACGGTCTTCTTTATCTCAGAGGAGCTCCAGCAGGGTGAATGTCTGTTTTGTTGTGGATGATAAGATGAAAGGTGATCTGGACTCTTCACCATGTGAAGAAGAACCAAGCTTACTTGAAAGGGAAATGGCATCAGAGAGCTTACAGCAGTCAGAACATCTTGAAATTGAGGATGACAGGAGCACTGAAGCTTCAAAATTTGAGATGGAGCGAACATCTGCTGCAGCAGAGATTGGTCTCACAAAGAAGACACGTAAGAAGTCCAGGAAGATATCAGAAATCAAAGTGACCAGATTATACTGCAAAGAAAGGAAGTTGGTTCTATCCACACCTCAGAAGGAAGGTAAAAAGCATTGTCAGCCAAGAAAATTCCGTAAATGCCGTGAAGCTAATGCAAGGAATGACGAAAGTCATAAAAAATCTTCATCTCTCAGCTCTTCCCAGCATCAAATTGTGAAGCGATCCAAATTTAAGAAGTTTCAGCGTCAGTGCAGTGGTTCTGAAGGATTGGTTGTGGCCGCTCGCAATGGAAGGAGTCCAAAGAAATTGAACTGTGTAAATAATACTGATGAAGCCCCTTCGCATGCAAACAATGGGTCTCTGGAGTCTCCAACTTGGAGGAACGTCACCAAGTCAAAACAATCCAAAGTCCACAAGGAAAATGGACGAAAGAGATTGCGTGGATACCAGATTGACGATGATGATCTTTTGGTTGCAGCTATCATAAAAAACAAAGACTTCAGCTCTAACAGCAAACAGTCTGCTGCCAAAACCTGTAACTCAAAAGCTGTGAGAAAGCTCAAGAGTCAAAAGGGCAGTTGCAAGTTGCTTCCACGAAGTCCTGGGAAAGGTGGAAAGCACCACATGGATGGGAAGTGGTCCTCCACGGGAGCAAGAACAGTGCTTTCCTGGTTGATTGATGCTGGTGTTGTTTCTGTGAATGATGTGGTCCAATACCGGAGCCCAAAGGATGATGCAGTGGTTAAAGATGGCTGGGTTACTAAGGATGGGATCCTCTGTAAGTGCTGCAACAAAGTGCTTTCTGTGTCTGAGTTCAAGGTTCATTCTGGTTTCAAGCTGTACCGACCCTGTTTGAATCTTTTCATGGAGTCCGGTAAGCGATTTACCTTATGCCAGTTCCAGGCATGGTCAGCTGAATACAAGGCCAGGAAAGGTGGAACACGAGCAGTGGAAGTTGATGAGGTGGATCAGAATGATGATACATGTGGACTTTGTGGTGATGGGGGTGAGTTGATATGTTGTGATAACTGCCCATCTACTTTTCATCAGGCGTGCTTGTCTGCACAGGAGCTCCCTGAAGGCAGTTGGTATTGCCCAAACTGCACTTGTCAGGTTTGTGGGGACGTGGTCAAAGAGAAAGAGGCTTCAAGTTCCTTGGTTGTACTAAAATGCTCTCAGTGCGAGCATAAATATCATGGGACATGCATAAAAGAAAATGGTATTTGTAAAGTCATTTCTGATACGTGGTTTTGTGGAGCGAACTGTCAGCAGGTTTACTGGGGTCTTCGTTCTCGTGTTGGCATTTTGAACCATATTGCTGATGGCTTTTCATGGACCCTTTTGAGATGTATACATGGTGACCAAAAATCTTGTTCTGCACAAAGATTTGCACTGATGGCAGAGTGCAACTCAAAATTAGCTGTTGCTCTTACTATTATGGAAGAATGCTTTCTCTCCATGGTGGACCCAAGAACAGGCATAGACATGATACCACACGTCTTATACAATTGGGGCTCAAATTTCACACGTTTAAATTATCAAGGCTTTTATGCTATGGTCTTGGAGAATGGGGATGAGCTTATATCGGTAGCATCCATCAGGGTGCATGGAGTCACGGTTGCAGAGATGCCTCTTATTGCAACTCGTAGTGAGCATCGCCGCCGGGGAATGTGTCGACGCCTTATAAATGCAATTGAAGAGATGTTAAAATCTTTCAAGGTTGAGAGGCTGGTAGTAGCTGCCATTCCAAGTTTAGTGGACACATGGACATTGGGTTTTGGCTTTACGCCCATGGACGATGAAGAGAAAGAACAGTTAAACAGCATCAACTTGATGATGTTTCCTGGAACAACATTGCTAAGAAAGAGCTTGTACGAGAAAGAAGCTATGGAGTTCAAACAAGAAGGACCAGGTGATCTGTCGCCCACAAGATCAGATGGATCAATAGAAAGAGGTGTTTGTGTTGATGAAAGGACCCTCCTCAAGTCTGCCAAAAAATCTGATGGTAACTGTTGTGTAGTCGAAGTTGTCTCGGAAGCGGCACCTGTGCTTGACCTCAAGAATCTGCAGTTGGATGAAGAACAGGGAAGTAGTCCGCCGAAACATCTTTCGACCCACAAATTTACTTCTAACATTGAATGTTGCAGTCTGAGGAAAGAAACCTTGGACATATATGGTGGGAGTCAGCTTTTTTCAACAGAACAGCCGCGAAAAACCCGTGCCAGGCATGGGAAGTAG 5322 0.4337 MLFDEEIEGLFDDGFEGSNEERRIFMEVFRGNDAGSISKRCLVTGAINFEADDNKHTNALFNLTSENSLLTSHSSTKDSYVEDSCTVNEASGHVKQNHEGISRVIAGSGCVQERCTASVGRDGREANVKRMKWSVDELADPRHKSSTDDLPGVKKDLIQLDLLKEVVPVTPTPDSYRIGQTITCHLVESSSEGIISRCYLLKHHREVDTGGHVDDGEASKSKLSSLFGIDGNEVIESKPIISPVSQESIAPRLLVGGAPIAHKSGALIAAKEQSQESVLLNSDIVNMTWKRDSTKDLRARLRCRINHLLMATGWRLEKRKRGTRVYMDSVYISPWGKVIRELHKAWRSCGESLFADGYKLMQQENGRQWVAIREFWSDLSDTLMHIEKEMQQLETSISLADQWSLLDPFVTVIYIDRQIGALREGRPVKAVRTALFDLSKEKDTLAVKNVDGIRNQLKGLCGDQIGSLTESLVSACESGSTCIQVDTCLHDTPLTAEIAGRVADGNRHVCNEQYSNGSFSIFGQQRQGGAVKALKGISIYLKEEKSVFVEANIIDATGNHLVGTFRNQIGSLNLGSELARGSDVKCIQEDTCLHDAPATSGSVVTVVEGTGNVPPQQDSDGSLSTFGEHSSGRIEVGTVTAIKGVSVDVGEENGTEFKGESMERVGNQLQGSFQDQLGCLNEFLAPARDSDSTSAQVDTCLHCTPLVAEGVERVVKGMENACNQKGNRESSSILCQQSCQNEDLKVKCRSGGLNRHDGEVCKGNIKTQARCIGNGSDDGDLNSMQCNFLAGQPKNSAVLLSDANVVTTESTCSQLEGSLANDSFVQDSATVHSEQPKSQDLKKTQSINMEETIECMPQKKLVCFDLNVEINGMDTLKEVVTEGTREILLPSRHTKELITGSQLCGQSANEQQKLFLYSQEKVPHGMIEHSKEDGLPQEAVKDVAMHYETRSSLSQRSSSRVNVCFVVDDKMKGDLDSSPCEEEPSLLEREMASESLQQSEHLEIEDDRSTEASKFEMERTSAAAEIGLTKKTRKKSRKISEIKVTRLYCKERKLVLSTPQKEGKKHCQPRKFRKCREANARNDESHKKSSSLSSSQHQIVKRSKFKKFQRQCSGSEGLVVAARNGRSPKKLNCVNNTDEAPSHANNGSLESPTWRNVTKSKQSKVHKENGRKRLRGYQIDDDDLLVAAIIKNKDFSSNSKQSAAKTCNSKAVRKLKSQKGSCKLLPRSPGKGGKHHMDGKWSSTGARTVLSWLIDAGVVSVNDVVQYRSPKDDAVVKDGWVTKDGILCKCCNKVLSVSEFKVHSGFKLYRPCLNLFMESGKRFTLCQFQAWSAEYKARKGGTRAVEVDEVDQNDDTCGLCGDGGELICCDNCPSTFHQACLSAQELPEGSWYCPNCTCQVCGDVVKEKEASSSLVVLKCSQCEHKYHGTCIKENGICKVISDTWFCGANCQQVYWGLRSRVGILNHIADGFSWTLLRCIHGDQKSCSAQRFALMAECNSKLAVALTIMEECFLSMVDPRTGIDMIPHVLYNWGSNFTRLNYQGFYAMVLENGDELISVASIRVHGVTVAEMPLIATRSEHRRRGMCRRLINAIEEMLKSFKVERLVVAAIPSLVDTWTLGFGFTPMDDEEKEQLNSINLMMFPGTTLLRKSLYEKEAMEFKQEGPGDLSPTRSDGSIERGVCVDERTLLKSAKKSDGNCCVVEVVSEAAPVLDLKNLQLDEEQGSSPPKHLSTHKFTSNIECCSLRKETLDIYGGSQLFSTEQPRKTRARHGK* 1774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00853 1773 MobiDBLite consensus disorder prediction 991 1015 - -
Eupl02g00853 1773 FunFam Increased DNA methylation 1 1347 1399 - -
Eupl02g00853 1773 CDD PHD2_CHD_II 1357 1396 - -
Eupl02g00853 1773 SMART PHD_3 1398 1451 IPR001965 -
Eupl02g00853 1773 SMART PHD_3 1356 1397 IPR001965 -
Eupl02g00853 1773 CDD NAT_SF 1548 1607 - -
Eupl02g00853 1773 MobiDBLite consensus disorder prediction 991 1018 - -
Eupl02g00853 1773 Pfam PHD-finger 1357 1398 IPR019787 -
Eupl02g00853 1773 MobiDBLite consensus disorder prediction 1073 1090 - -
Eupl02g00853 1773 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1541 1646 IPR016181 -
Eupl02g00853 1773 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1399 1453 IPR013083 -
Eupl02g00853 1773 SUPERFAMILY FYVE/PHD zinc finger 1342 1397 IPR011011 -
Eupl02g00853 1773 PANTHER PHD FINGER FAMILY PROTEIN 1 458 - -
Eupl02g00853 1773 MobiDBLite consensus disorder prediction 1136 1159 - -
Eupl02g00853 1773 SMART ring_2 1357 1396 IPR001841 -
Eupl02g00853 1773 SMART ring_2 1398 1440 IPR001841 -
Eupl02g00853 1773 CDD PHD_SF 1397 1446 - -
Eupl02g00853 1773 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1347 1398 IPR013083 -
Eupl02g00853 1773 ProSiteProfiles Zinc finger PHD-type profile. 1354 1399 IPR019787 -
Eupl02g00853 1773 MobiDBLite consensus disorder prediction 1059 1106 - -
Eupl02g00853 1773 Gene3D - 1532 1641 - -
Eupl02g00853 1773 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1489 1653 IPR000182 GO:0016747
Eupl02g00853 1773 Pfam Tify domain binding domain 1279 1327 IPR032308 -
Eupl02g00853 1773 MobiDBLite consensus disorder prediction 1136 1173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00853 Eupl-Chr2 11139888 11163620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00853 1 452 PHD Transcription Factor Family AT3G14980 36.304 8.71e-56 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl02g00853 TDBD 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00853 - - nnu:104612164 1606.27