Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00846 ATGGATCCTTCCATTAAGAAGAGAAAGGCCGACGAGAACGGCGGCATCGCTGTCGATGCGGCTCTAAGCACGATGCTAACTCCAGAGGACGCTCGTAAGATCATCGAACCCTTCACTCAAGAACAGCTTCTCGAAATCCTCCAGGACGCCGCCATCCGCCACTTGGACGTCCTCGATGCTGTCAGATCCATCGCTGATCATGATCCTGCCCAGCGCAAGCTCTTCATCCGCGGCCTTGGGTGGGACACCACCACCGAGGGCTTACGCACCCTCTTCTCATCCTACGGTGAGCTTTCAGAAGCCGTGGTCATCCTCGACAAGGCCACCGGTAAGAGCAAGGGCTATGGATTCGTCACCTTCAAGCACATCGACGGTGCTATGCTCGCCTTGAAGGAGCCAAGCAAGAAGATCGACGGTCGGATGACCGTCACCCAGCTTGCTGCTTCCGGAATCTCCGGGCCAACTGCTAACTCCCCAGCCATTGATGTTTCCATGAGGAAAATTTATGTGGGGAACGTACCGATTGATATGCCGGCGGACCGGCTCTTGGTGCACTTCTCTTCGTACGGAGAGATTGAGGAGGGCCCATTAGGGTTTGATAAGCAGACGGGGAAGTCGAGAGGGTTTGCGTTGTTCGTGTACAAGACGGCTGAGGCTGCGAGGGCTTCGCTTGTGGACCCCATAAAGACGATCGACGGGCATCAGCTGGTCTGCAAATTGGCGATCGAAGGTAAGAAGGGGAAGCCCGGTGGGCCCACCCCAACTGGAGTCCCAGGTGACGCTGTTGGAGATGGGCTTGGTATGCCGCCTCCCTCTTCCATGCCGACTTCTCTCACTTCTCAGTACGGTGCACAGGGCGGTCTTTCGTCTTATGGGGGATTCGCTGGTGGACACCAGGGCCCACCAGGGTTGGCTTATCACCATCAGCATCATATGCAGCCATCTGTTGGTGCTACAGGGCTGTCATCGACGGTGGGGAGTCAAGTGCCATCCTCGTTGGGTGGCAGTGCTGGGTATGGTGCTGGACTGGGTGGTCCTTACGGTGGATTGGGTGGTGGCCCTGGTGGACCAACTTCAGGTGCGTACGGTGGATTGGGTGGCGCTGGCACTGGTGCTGGTGCTGGTGCTGGTGCGGGCACTGGATCGTCTTTCTATAGGTTGCCAGCGACTTCAGTTGGGATGCCTTCTGGGGGTTATTCAGAGAGTGCGCACTATGGGTTGTCGGGGTCTGTATTCCCGAGCCAGCAACACCCGCCGACAGGGTCATCGCCCTTGCCTAGGGTTGCGCCCGGGGGGATTTACCAGAGCATGCCCCCTTACTACTGA 1326 0.5777 MDPSIKKRKADENGGIAVDAALSTMLTPEDARKIIEPFTQEQLLEILQDAAIRHLDVLDAVRSIADHDPAQRKLFIRGLGWDTTTEGLRTLFSSYGELSEAVVILDKATGKSKGYGFVTFKHIDGAMLALKEPSKKIDGRMTVTQLAASGISGPTANSPAIDVSMRKIYVGNVPIDMPADRLLVHFSSYGEIEEGPLGFDKQTGKSRGFALFVYKTAEAARASLVDPIKTIDGHQLVCKLAIEGKKGKPGGPTPTGVPGDAVGDGLGMPPPSSMPTSLTSQYGAQGGLSSYGGFAGGHQGPPGLAYHHQHHMQPSVGATGLSSTVGSQVPSSLGGSAGYGAGLGGPYGGLGGGPGGPTSGAYGGLGGAGTGAGAGAGAGTGSSFYRLPATSVGMPSGGYSESAHYGLSGSVFPSQQHPPTGSSPLPRVAPGGIYQSMPPYY* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00846 441 PANTHER GEO13361P1-RELATED 57 338 - -
Eupl02g00846 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 225 IPR000504 GO:0003723
Eupl02g00846 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 140 IPR000504 GO:0003723
Eupl02g00846 441 Gene3D - 155 268 IPR012677 -
Eupl02g00846 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 149 IPR000504 GO:0003723
Eupl02g00846 441 MobiDBLite consensus disorder prediction 409 441 - -
Eupl02g00846 441 FunFam UBP1-associated protein 2C isoform A 55 158 - -
Eupl02g00846 441 SUPERFAMILY RNA-binding domain, RBD 70 152 IPR035979 GO:0003676
Eupl02g00846 441 SUPERFAMILY RNA-binding domain, RBD 154 261 IPR035979 GO:0003676
Eupl02g00846 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 246 IPR000504 GO:0003723
Eupl02g00846 441 Gene3D - 62 154 IPR012677 -
Eupl02g00846 441 SMART rrm1_1 73 145 IPR000504 GO:0003723
Eupl02g00846 441 SMART rrm1_1 167 239 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00846 Eupl-Chr2 11071461 11080690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00846 162 258 C2H2 Transcription Factor Family AT2G19380 37.113 8.83e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00846 K12741 - nnu:104612135 570.852