Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00838 ATGGGTAGCGGAGTCGGGCTACGCACATGGGGCTTAAGGTTTGCGGCGACGGCCGAGAAACCTGTCCTTTGGCGTCGCACATTTCCGCAGATCCCCCGGCGCATGTTAGCGACTACCTGCTCCACTTCTATCACAAAGAAGACGAAGAAGGAGAAGGTCATTGTAATCTCGGGTCCCACAGGCGCTGGCAAAAGCAGGCTTGCGCTGGAGCTTGCAAAGAGGCTTAATGGAGAAATCATCAGTGCAGATTCGGTGCAGGTTTATCGAGGACTTGATATTGGATCTGCGAAGCCTTCGCCTAGTGACAGAGAGGAAGTGCCACACCATTTGGTTGATATATTGCACCCATCCCAAGAGTATTCTGTTGGGCAATTCTTTGATGATGCAAGGCAAGCTACAAGGGATATTCTTGAAAATGATCATGTACCGATAGTTGCTGGTGGGACCGGATTGTACTTAAGATGGTATATATATGGAAAGCCAGAAGTTCCAAAAGCATCTCTAGAGATTGCTTCTGAAGTATACTCTGAGCTCATGGATTTAGAGAGGAATGGGGATTGGGATGCAGCTGTGCAATTGGTGGTGAAAGCAGGTGACCCAAGGGCTCAATATTTGGCTTCCAATGATTGGTATCGCTTAAGGCGTAGCCTTGAGATTATCAAGTCTAGTGGATCACCTCCATCTGCTTTTCAAGTACCCTATGATTCTTTTAGGGAACAGTTTGATTCAAGAATATCAGACCCCTCTCACAATGGCACCTTTTCTGGTGATGGACTTGGAGAAAACCTTTCAAAGGATTTGGACTATGACTTCATTTGCTTTTTCCTTTCAAGCCAAAGATTGGATCTTTATAGAATGATCGATCTGCGTTGTGAAGATATGCTTACAGGAAGTGAGGGAATTCTCTCTGAGGCCATGCGGCTTCTTGATATAGGTCTTCTTCCAAATTCAAATTCTGCAACACGAGCAATTGGTTATAGACAAGCTATGGAGTACCTATTAAAGTGTCGGCGACAAGGGGGTAGGAGCTCTTCTGGAGAATTCTCTGCCTTCTTATCAGAATTTCAGAAAGCATCTAGAAATTTCGCTAAAAGGCAAATGACGTGGTTCCGTAATGAGCTTATTTATCACTGGCTTGATGCTTCACAACCCTTGGAAAAAGTGCTCGACTTTATTTATGATGCATACTATGACCAAACTGGAAACTTGGTGGTGCCCGAATCACTTCAAATGAAGAAAGACATTTCGAGTCGCCGGGAAATCTCGGAACTGAAGGCCTACCGCACTAAAAATAGGTATAATCAGTCTACACTTAATACTATTCAATTTTATTATTTAAGATTATGGCTCAACGGATTCTTGGCTTGTGTAGACATTTCATCAGGCGTGAAGATTGTTCTGACATTTTGGATTGGATAA 1419 0.4397 MGSGVGLRTWGLRFAATAEKPVLWRRTFPQIPRRMLATTCSTSITKKTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDIGSAKPSPSDREEVPHHLVDILHPSQEYSVGQFFDDARQATRDILENDHVPIVAGGTGLYLRWYIYGKPEVPKASLEIASEVYSELMDLERNGDWDAAVQLVVKAGDPRAQYLASNDWYRLRRSLEIIKSSGSPPSAFQVPYDSFREQFDSRISDPSHNGTFSGDGLGENLSKDLDYDFICFFLSSQRLDLYRMIDLRCEDMLTGSEGILSEAMRLLDIGLLPNSNSATRAIGYRQAMEYLLKCRRQGGRSSSGEFSAFLSEFQKASRNFAKRQMTWFRNELIYHWLDASQPLEKVLDFIYDAYYDQTGNLVVPESLQMKKDISSRREISELKAYRTKNRYNQSTLNTIQFYYLRLWLNGFLACVDISSGVKIVLTFWIG* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00838 472 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 50 385 IPR039657 -
Eupl02g00838 472 Gene3D - 161 232 - -
Eupl02g00838 472 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 53 231 IPR018022 GO:0008033
Eupl02g00838 472 FunFam tRNA dimethylallyltransferase 9 161 232 - -
Eupl02g00838 472 Hamap tRNA dimethylallyltransferase [miaA]. 53 390 IPR018022 GO:0008033
Eupl02g00838 472 Gene3D - 50 442 IPR027417 -
Eupl02g00838 472 Pfam IPP transferase 86 373 - -
Eupl02g00838 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 175 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00838 Eupl-Chr2 10854104 10874581 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00838 56 230 C2H2 Transcription Factor Family AT2G27760 31.217 1.66e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00838 K00791 - nnu:104613085 688.723