Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00804 ATGGATTTTCATGAAGACCAGTTGCACGACCATCACCATGGAAACGAATACAACCTAAACAACAAGATCCTGCTCACGACCATCGTCTCCTTATCCTCAGTAAGCGTAATTGTCTTCCTCCTTTACTTCTATGGAAGGTGTCTTCTCTGGTGCCAAGCGAGGAGACGAGCCGCAATCCCTCTACTGACCATTGCGGTTGTGCACTCAGGCCAGCTCAAGACGGGGCTTGATCCATCGGTCATCGCCTCCCTACCCATATTCGTCTACAAGCAAACCGACAGGTTCGATGAAACGGCCACGGTCGATTGTGCCGTTTGCTTGAGCACCTTAAAGGGGGAAGATATGGCTAGGCTTCTACCCAATTGTAACCACATGTTCCATGCGCAATGCATCGATACGTGGTTGAGCTCTAACTCTACGTGCCCAATTTGCCGCAGGGAGGCTGAGCCTCAAGCTCAACCCAAATCTGTTGAGTCGGGTGCTGGGGTACTCCCAGCCTCGACTCCACAGATAAGCTCTCACTCTACGTGCTCAATTTGCTGCACGGTGGCTGAGCCTCAAGCTCAGCCCGATTCTGTTGAGTCGGGTGCTGGGGTCCCAGCCTCTGTTCCACAGTTGAATCTTATGGCGACAAGTTCCGAGACTACGCCTGATGCTGAGCCGCAGTCTTCGAAGTTTCGAAGGATACTTATTAGGGATAGATCAGAGAGGAGAATACAACCTGGGTCAATTGCGAAAGGCAAATCGATTCGGATAACATAA 762 0.5105 MDFHEDQLHDHHHGNEYNLNNKILLTTIVSLSSVSVIVFLLYFYGRCLLWCQARRRAAIPLLTIAVVHSGQLKTGLDPSVIASLPIFVYKQTDRFDETATVDCAVCLSTLKGEDMARLLPNCNHMFHAQCIDTWLSSNSTCPICRREAEPQAQPKSVESGAGVLPASTPQISSHSTCSICCTVAEPQAQPDSVESGAGVPASVPQLNLMATSSETTPDAEPQSSKFRRILIRDRSERRIQPGSIAKGKSIRIT* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00804 253 CDD RING-H2_EL5-like 102 145 - -
Eupl02g00804 253 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Eupl02g00804 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 152 IPR013083 -
Eupl02g00804 253 MobiDBLite consensus disorder prediction 208 222 - -
Eupl02g00804 253 FunFam E3 ubiquitin-protein ligase ATL6 65 151 - -
Eupl02g00804 253 SMART ring_2 103 144 IPR001841 -
Eupl02g00804 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 18 172 - -
Eupl02g00804 253 Pfam Ring finger domain 102 145 IPR001841 -
Eupl02g00804 253 MobiDBLite consensus disorder prediction 208 253 - -
Eupl02g00804 253 MobiDBLite consensus disorder prediction 225 241 - -
Eupl02g00804 253 SUPERFAMILY RING/U-box 80 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00804 Eupl-Chr2 10233201 10238873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00804 10 240 C3H Transcription Factor Family AT2G42360 38.750 2.18e-42 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00804 K19038 - cit:102615766 173.326