Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00775 ATGGGGCAAAGAAACATGCTATGCACAAGTCAGATGCTTGATTTGGAAATGGATCAACAAGGCCAGGGCCATCTCCGTCCTGAGCCTTGCGTACTTTTGGGCAACATTGCTGATTTTCCACACCCGAATGTCCATCCAGTTTTATCAGCTTCTGGGAACACAAGTAATCTTGATCTCCGCAATTTTCCAGAACATCATGATCGTGGCCTATTCTACGGGAGCCAGTATAATGGTCTCCAGCATCATCATCCTGTTGCTAATATCGATTTGGGTGGTGCTGCTCCATCTAACTTCTATAATCCATACATGATCCCTTCATCTGGTAGCAGAATGTTCCCTGTACCGCTAAATCACGGTTCATCTGATCAGCTGCCATCTTCCAGCAATCCCAGCATTATTGGAGTTGGTGTTGATGAGTACGAAAGGAACAATCACTTCATGGATAGTGTTAGAAGTTCAGGCAAGAGAAAGAATGCCGAAGGAGTTCCAGGGAACTACCAACATGTTAGTGGCTCCGCAAGCTCGAGTTCATCTTCTTTGGGCACCCCATTGAATACTGGGCCACACCAGTGGGAGGAACATTTTGAAGCTAGAGCTGGTGTGTTTGAAGCTGCAGCTTTTGTACCTCCAGAGTACAGAGCGAATGGCATTCTATCCATCACAGAAGGAGGATTCGGGAGAAGTGTAAGGAGCAGATCAAGTACTATCGGCATTCAGTTGGACTCCACTCTGGCGCATAACCAGAACCATTTTGCTCAGGGAAGTTATATCAGTCAGTCCTTTCAGCCCGCAAGCAGTGTTTGGGTGGAACAATTTGGGAGTAATGGCAGCGATGGAGGCCCTTCGACCTGGAACTATGCTCCTGCTATACCTTATTTACATGGGAGAGGTGTCAATGGAGGTTCTTTAGAGATTGCAAGCATGGGTGGACAGGGATATCAGGATACCACTAACAGCAGAAATTCTGCAATTCTCTTGCATGCTTCTTCCATGCACCACCATCTCCACTTCCAGCATCACCTTCCCCCTCCACACATGCAAGCAATGGGAGGCCATAATTATAATTATCACCCTCAAGTTCCAATACCTTCCTATGGGTATCCAGCGAACAACGCTTTGCACCATGGCACTTTGAATCCTTCTCGGGATGGTATGGAAACAGGGCCAAGGTATCCAAGACCATTTCCATCCAATGGCCTCAGGATATACCGTCCTCACCCGAGTGGGGTACGTCAGACCGCTCCGGAAGACAGCAACCGTCCTCATCTGAGAATTCTGTCAGCAGATGAGGTTGCCATACTGGAGTTTCCAGGCTTTTATGAATTTGGGAATTTCATAGATCACCACAGAGATATGCGGTTGGATATAGATGACATGTCTTATGAGGAACTACTTGCCTTGGAGGAACGGATTGGCAACGTAAAAACTGGGTTGTCTGAACAGACCATCTTAAGTCATCTCAAGACGAGAATTCATGTTTCATCTGCTACTTATTTCCATGAGTCTGCGAGCACGGATCGGGAGAATGAAACCTGCATTATATGCCAGGTTGAATACAAGAACCAGGAGAAGATTGGAACTCTTGATTGCGGACACGAATACCATGCAGACTGCATAAAACAATGGCTGCTGGTGAAGAACGTATGCCCCATCTGCAAAATGCCAGCTTTGACCGTGGGGGAAATGGAGGAAGGATCTTGA 1701 0.4691 MGQRNMLCTSQMLDLEMDQQGQGHLRPEPCVLLGNIADFPHPNVHPVLSASGNTSNLDLRNFPEHHDRGLFYGSQYNGLQHHHPVANIDLGGAAPSNFYNPYMIPSSGSRMFPVPLNHGSSDQLPSSSNPSIIGVGVDEYERNNHFMDSVRSSGKRKNAEGVPGNYQHVSGSASSSSSSLGTPLNTGPHQWEEHFEARAGVFEAAAFVPPEYRANGILSITEGGFGRSVRSRSSTIGIQLDSTLAHNQNHFAQGSYISQSFQPASSVWVEQFGSNGSDGGPSTWNYAPAIPYLHGRGVNGGSLEIASMGGQGYQDTTNSRNSAILLHASSMHHHLHFQHHLPPPHMQAMGGHNYNYHPQVPIPSYGYPANNALHHGTLNPSRDGMETGPRYPRPFPSNGLRIYRPHPSGVRQTAPEDSNRPHLRILSADEVAILEFPGFYEFGNFIDHHRDMRLDIDDMSYEELLALEERIGNVKTGLSEQTILSHLKTRIHVSSATYFHESASTDRENETCIICQVEYKNQEKIGTLDCGHEYHADCIKQWLLVKNVCPICKMPALTVGEMEEGS* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00775 566 ProSiteProfiles Zinc finger RING-type profile. 512 553 IPR001841 -
Eupl02g00775 566 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 150 557 IPR045191 GO:0061630
Eupl02g00775 566 SUPERFAMILY RING/U-box 504 557 - -
Eupl02g00775 566 Pfam Ring finger domain 511 553 IPR001841 -
Eupl02g00775 566 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 474 557 IPR013083 -
Eupl02g00775 566 MobiDBLite consensus disorder prediction 165 186 - -
Eupl02g00775 566 MobiDBLite consensus disorder prediction 150 189 - -
Eupl02g00775 566 SMART ring_2 512 552 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00775 Eupl-Chr2 9780033 9788710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00775 447 559 C3H Transcription Factor Family AT2G15530 56.637 1.44e-36 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00775 K19041 - nnu:104613187 706.057