Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl02g00732 | ATGTCTATCCATATCTCAAAAAACCCAACAACAGGAAGTAACAAGTCTTATCCTTCACCAGTTGCTACATATGAGGAAGTTGCTCAAAATGCAGAGATCTTCATGGTTACACTCAAGGACTTTCACGGATCCTTTGGGACGAAGTTTATGGTGCCTACTATAGGAGGAAAGGCTCTAGATCTACACCGCCTTTTTGTAGAGGTGACATCTCGTGGTGGTCTTGAAAAGGTTATTAGACATCGCAAATGGAAAGAAATAATTGCCGTCTTCAGTTTCCCAACAACAATTACAAATGCATCCTTTGTCTTGCGGAAGTACTATATTTCCTTGCTCCACCACTACGAGCAAGTCTATTACTTTCGAAGACAAGGCCCGCCAATCACAATGGCCTCTCCTATCAGTGGGTCGGCAGCCTTACAGGTTCAATCTCCGCCAACTCAAGGCACCAGTGAGAATCAGTTACCAGCAAGTTCTCAGATGTGGACTGGCTGTTGGGTGACTGGAACCATCGATGGGAAATTTGATAGTGGATATCTAGTGACCGTGAGTTTTGGTTCTGAGAAGCTGAAAGGCGTCCTGTATCACGTTCCTGTCCACAATTCTAATACTTCAGGTGTACCTCATCGCCGAAACCGGAAAAGATCCAGGATGGCATCCAAAGATCCTTCTTGCCCCAAACCAAACAGGAGTGGTTATAACTTCTTCTTTTCTGAGCATTATGCCAGACTGAAGCCGTTGCACCATGGTCAAGAAAAAACAATCAGCACGAAGATTGGGAACCTATGGAGCAAACTCACCGATGCTGAAAAACAGGTTTATCGAGAGAAAGCGTTGAGAGACAAGGAGAGGTACCGAAGTGAAATGATGGAGTACAAAAAATCATCCAATGGTTCAAAACCACAATAG | 906 | 0.4426 | MSIHISKNPTTGSNKSYPSPVATYEEVAQNAEIFMVTLKDFHGSFGTKFMVPTIGGKALDLHRLFVEVTSRGGLEKVIRHRKWKEIIAVFSFPTTITNASFVLRKYYISLLHHYEQVYYFRRQGPPITMASPISGSAALQVQSPPTQGTSENQLPASSQMWTGCWVTGTIDGKFDSGYLVTVSFGSEKLKGVLYHVPVHNSNTSGVPHRRNRKRSRMASKDPSCPKPNRSGYNFFFSEHYARLKPLHHGQEKTISTKIGNLWSKLTDAEKQVYREKALRDKERYRSEMMEYKKSSNGSKPQ* | 302 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl02g00732 | 301 | Coils | Coil | 274 | 294 | - | - | |
Eupl02g00732 | 301 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 10 | 294 | - | - | |
Eupl02g00732 | 301 | CDD | HMG-box_AtHMGB9-like | 225 | 291 | - | - | |
Eupl02g00732 | 301 | SMART | ARID_2 | 25 | 115 | - | - | |
Eupl02g00732 | 301 | Pfam | ARID/BRIGHT DNA binding domain | 32 | 115 | IPR001606 | GO:0003677 | |
Eupl02g00732 | 301 | Gene3D | - | 21 | 131 | IPR036431 | GO:0003677 | |
Eupl02g00732 | 301 | SUPERFAMILY | HMG-box | 222 | 295 | IPR036910 | - | |
Eupl02g00732 | 301 | Gene3D | High mobility group box domain | 209 | 301 | IPR036910 | - | |
Eupl02g00732 | 301 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 225 | 292 | IPR009071 | - | |
Eupl02g00732 | 301 | SMART | hmgende2 | 224 | 293 | IPR009071 | - | |
Eupl02g00732 | 301 | Pfam | HMG (high mobility group) box | 225 | 292 | IPR009071 | - | |
Eupl02g00732 | 301 | SUPERFAMILY | ARID-like | 25 | 130 | IPR036431 | GO:0003677 | |
Eupl02g00732 | 301 | MobiDBLite | consensus disorder prediction | 200 | 226 | - | - | |
Eupl02g00732 | 301 | CDD | ARID_HMGB9-like | 30 | 115 | IPR045303 | GO:0003677 | |
Eupl02g00732 | 301 | ProSiteProfiles | ARID domain profile. | 28 | 119 | IPR001606 | GO:0003677 | |
Eupl02g00732 | 301 | SMART | bright_3 | 29 | 120 | IPR001606 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl02g00732 | Eupl-Chr2 | 9052100 | 9060159 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl02g00732 | 22 | 294 | ARID Transcription Factor Family | AT3G13350 | 51.056 | 2.40e-96 | 285 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | ARID | Eupl02g00732 | ARID | 5.4e-18 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl02g00732 | - | - | nnu:104594344 | 412.535 |