Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00732 ATGTCTATCCATATCTCAAAAAACCCAACAACAGGAAGTAACAAGTCTTATCCTTCACCAGTTGCTACATATGAGGAAGTTGCTCAAAATGCAGAGATCTTCATGGTTACACTCAAGGACTTTCACGGATCCTTTGGGACGAAGTTTATGGTGCCTACTATAGGAGGAAAGGCTCTAGATCTACACCGCCTTTTTGTAGAGGTGACATCTCGTGGTGGTCTTGAAAAGGTTATTAGACATCGCAAATGGAAAGAAATAATTGCCGTCTTCAGTTTCCCAACAACAATTACAAATGCATCCTTTGTCTTGCGGAAGTACTATATTTCCTTGCTCCACCACTACGAGCAAGTCTATTACTTTCGAAGACAAGGCCCGCCAATCACAATGGCCTCTCCTATCAGTGGGTCGGCAGCCTTACAGGTTCAATCTCCGCCAACTCAAGGCACCAGTGAGAATCAGTTACCAGCAAGTTCTCAGATGTGGACTGGCTGTTGGGTGACTGGAACCATCGATGGGAAATTTGATAGTGGATATCTAGTGACCGTGAGTTTTGGTTCTGAGAAGCTGAAAGGCGTCCTGTATCACGTTCCTGTCCACAATTCTAATACTTCAGGTGTACCTCATCGCCGAAACCGGAAAAGATCCAGGATGGCATCCAAAGATCCTTCTTGCCCCAAACCAAACAGGAGTGGTTATAACTTCTTCTTTTCTGAGCATTATGCCAGACTGAAGCCGTTGCACCATGGTCAAGAAAAAACAATCAGCACGAAGATTGGGAACCTATGGAGCAAACTCACCGATGCTGAAAAACAGGTTTATCGAGAGAAAGCGTTGAGAGACAAGGAGAGGTACCGAAGTGAAATGATGGAGTACAAAAAATCATCCAATGGTTCAAAACCACAATAG 906 0.4426 MSIHISKNPTTGSNKSYPSPVATYEEVAQNAEIFMVTLKDFHGSFGTKFMVPTIGGKALDLHRLFVEVTSRGGLEKVIRHRKWKEIIAVFSFPTTITNASFVLRKYYISLLHHYEQVYYFRRQGPPITMASPISGSAALQVQSPPTQGTSENQLPASSQMWTGCWVTGTIDGKFDSGYLVTVSFGSEKLKGVLYHVPVHNSNTSGVPHRRNRKRSRMASKDPSCPKPNRSGYNFFFSEHYARLKPLHHGQEKTISTKIGNLWSKLTDAEKQVYREKALRDKERYRSEMMEYKKSSNGSKPQ* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00732 301 Coils Coil 274 294 - -
Eupl02g00732 301 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 294 - -
Eupl02g00732 301 CDD HMG-box_AtHMGB9-like 225 291 - -
Eupl02g00732 301 SMART ARID_2 25 115 - -
Eupl02g00732 301 Pfam ARID/BRIGHT DNA binding domain 32 115 IPR001606 GO:0003677
Eupl02g00732 301 Gene3D - 21 131 IPR036431 GO:0003677
Eupl02g00732 301 SUPERFAMILY HMG-box 222 295 IPR036910 -
Eupl02g00732 301 Gene3D High mobility group box domain 209 301 IPR036910 -
Eupl02g00732 301 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 225 292 IPR009071 -
Eupl02g00732 301 SMART hmgende2 224 293 IPR009071 -
Eupl02g00732 301 Pfam HMG (high mobility group) box 225 292 IPR009071 -
Eupl02g00732 301 SUPERFAMILY ARID-like 25 130 IPR036431 GO:0003677
Eupl02g00732 301 MobiDBLite consensus disorder prediction 200 226 - -
Eupl02g00732 301 CDD ARID_HMGB9-like 30 115 IPR045303 GO:0003677
Eupl02g00732 301 ProSiteProfiles ARID domain profile. 28 119 IPR001606 GO:0003677
Eupl02g00732 301 SMART bright_3 29 120 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00732 Eupl-Chr2 9052100 9060159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00732 22 294 ARID Transcription Factor Family AT3G13350 51.056 2.40e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Eupl02g00732 ARID 5.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00732 - - nnu:104594344 412.535