Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00679 ATGGCGGCTGGGCAGGTCGTTATGCGTGCCAGGTATAAGAACACCTCAGTGAAGGGCCCTGGGATTCCAGGAGTGCTAAGAATGACGGATGACAGATTTGTATTCACTCCTAATGATCCTAGGTCATCTGGGAAGCTCGATGTGGGGTTTACATCCATTAAAGGTCATAAATTCACCAAGGAGGGAAACCAAAAACAAGCACTACTAAATCTTACACAAGATCCAGAAATCAAGGGTGGAGGTTACATTTTTGAGTTTGACAAGTTTTCTGAACGTGATGTTTGCCGAGATTTTGTGGGTAAAGTCCTTGGTAAACTTCAGGCTATGTCAGGACATGATGCCAAAGTTGTTGCTGAAAGATCAGTTGCTGCAGTTAATGATGAACAACTTAGTTCGGCAGAAATGGAGCGTCGAATGAAGCTACTGCGAGAGGATAGCGAGTTGCAGAAACTGCACAAGCAATTTGTTATTGGTGGCATCTTGACAGAAGCTGAGTTCTGGGCAACAAGAAAGAAGTTACTTGCTGCTGATGCCAGCAGAACATCAAAACAACAAGTGGGGTTCAAAAGTGCTATGCTTGCAGATATCAGGCCATTGACTGATGGTCGGTCCAACAAAGTCACATTTAGCTTGACTCCGGAGATCATTCATCAGATTTTCAATGAAAAACCAGCTGTTCACCAGGCATTTCTGAATTTCGTTCCCAGTAAGATGTCAGAAAAAGATTTCTGGACCAAATATTGTAGAGCAGAATATCTCCATAGGACAAAAAATGCTGTTGCTGCTGCAGCAGAGGCTGCTGAAGACGAGGAGCTTGCTGTCTTCTTAAAGCATGACGATATATTGGCCAATGAAGCTCGGCGGAAGATCAGACGGGTTGATCCAACTTTAGACATGGAAGCTGATCAAGGGGATGATTACATGCATCTTCCGGATCATGGAATTCTTCGTGATGGAAGCAAAGAGACTACTGATTCAGAGTATGAAGAATATAGGAGGACCCTCGCACAAGATCTTAACCGGCATGCAGCCGTTGTTCTTGAAGGAAGAGCTCTAGATGTGGAATTGCGGGACACAAGGACTGTAGCAGAAGCACTTGCCAGGTCCAAACAGGCAGCTGAGTTAGCTACGGAAACCTCTGAGGAGAATGCAAACCAGGAGCGGGTGGAGAGGGTTTCTCGGCTGGCTGAAATTGAAGATCTTCAGGCACCTCGTGACCTTCCATTTGCACCTCTTTGTATCAAGGACCCTCGAGAGTACTTTGATTCTCAACAAGCTAATGCACTTAAAGCTTTAGGAGATACAGTGACTACAACAAAACCAATGAATTGCAGCCTGAGCACTGAGGAAGCATATGGTTTTTTGAGGGAGCTCATTTCTGAGATGAAAGCAACAGGACTGAGTGATCCCATAGTTAATCCTGAAGTTGCTCTTAAGGTTCTGAATGGATTGACTCAGCATCTATCAAGTACCAAGTTTCATCTTGGGAAGAACCCTCAGGAGAGTGTCCTTGATAGGCTGCCCAACAGAACTAAAGAGGAACTCTTGCATCATTGGACTTCTATTCAAGAGTTGCTAAAGCATTTCTGGTCATCATATCCAATTACAACTGCATACCTTTATGCCAAGGTAAGCAGATTGAAGGATGCCATGGCAGAGATCTATCCCAAGCTACAGGGGATAAAGGAAACCGTGCAGTCAGATTTCCGGCATCAAGTTTCTCTCCTTGTTCAACCCATGCTTCAGGCTCTAGATGCTGCATTTGCGCATTATGATGCAGATTTACAGAAGAGGTCAGCGAAGAGTGGGGAGAGACCAAATGGATTTGTTTAG 1833 0.4474 MAAGQVVMRARYKNTSVKGPGIPGVLRMTDDRFVFTPNDPRSSGKLDVGFTSIKGHKFTKEGNQKQALLNLTQDPEIKGGGYIFEFDKFSERDVCRDFVGKVLGKLQAMSGHDAKVVAERSVAAVNDEQLSSAEMERRMKLLREDSELQKLHKQFVIGGILTEAEFWATRKKLLAADASRTSKQQVGFKSAMLADIRPLTDGRSNKVTFSLTPEIIHQIFNEKPAVHQAFLNFVPSKMSEKDFWTKYCRAEYLHRTKNAVAAAAEAAEDEELAVFLKHDDILANEARRKIRRVDPTLDMEADQGDDYMHLPDHGILRDGSKETTDSEYEEYRRTLAQDLNRHAAVVLEGRALDVELRDTRTVAEALARSKQAAELATETSEENANQERVERVSRLAEIEDLQAPRDLPFAPLCIKDPREYFDSQQANALKALGDTVTTTKPMNCSLSTEEAYGFLRELISEMKATGLSDPIVNPEVALKVLNGLTQHLSSTKFHLGKNPQESVLDRLPNRTKEELLHHWTSIQELLKHFWSSYPITTAYLYAKVSRLKDAMAEIYPKLQGIKETVQSDFRHQVSLLVQPMLQALDAAFAHYDADLQKRSAKSGERPNGFV* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00679 610 SUPERFAMILY PH domain-like 22 105 - -
Eupl02g00679 610 Coils Coil 125 145 - -
Eupl02g00679 610 Pfam BSD domain 206 258 IPR005607 -
Eupl02g00679 610 PANTHER TRANSCRIPTION INITIATION FACTOR IIH-RELATED 6 601 IPR027079 GO:0000439|GO:0006289|GO:0006351
Eupl02g00679 610 Gene3D - 131 171 - -
Eupl02g00679 610 ProSiteProfiles BSD domain profile. 203 255 IPR005607 -
Eupl02g00679 610 SMART wurzfinal6 203 255 IPR005607 -
Eupl02g00679 610 SMART wurzfinal6 124 178 IPR005607 -
Eupl02g00679 610 Gene3D BSD domain 194 266 IPR035925 -
Eupl02g00679 610 ProSiteProfiles BSD domain profile. 134 178 IPR005607 -
Eupl02g00679 610 Pfam TFIIH p62 subunit, N-terminal domain 23 97 IPR013876 -
Eupl02g00679 610 SUPERFAMILY BSD domain-like 129 174 IPR035925 -
Eupl02g00679 610 SUPERFAMILY BSD domain-like 206 257 IPR035925 -
Eupl02g00679 610 MobiDBLite consensus disorder prediction 302 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00679 Eupl-Chr2 7999551 8024496 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BSD Eupl02g00679 PH_TFIIH 4e-07 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00679 K03141 - ming:122093837 980.319