Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00608 ATGGGACAGGACACAAACCAGGAAGAAGAGACGTGGAACCAGAGGAAGCAAACCCTAATTCAGGAACTTGCTCGAAAGCTCATCCATGGCGATGATTTGGAATCCAAAATCCAGGCTGCAAGGGACATCAGAAAGCTTGCCAAGTCCTCCGTCAAGACCCGTTCGAACTTCGCAGTTGCAGGCGTCATCCAACCCCTTGTCTCCATGCTCGTGTCTTCGAACTTCGATGCAAGAGAGGCCGCCTTACTTGCTCTCCTCAATCTCGCTGTTCGGAACGAACGAAACAAGGTCAAGATAGTGACATCTGGTGCTGTCCCCCCTCTTGTGGAGCTCCTCAAATTTGAAAATGGCAGTTTAAGGGAGTTAGCCACTGCAGCAATTCTGACTCTCTCAGCCTCAGCTTCAAATAAACCAGCAATTGCAGCTTCCGGAGCCACCTCCCTTCTGGTTCAGATCCTCAGCTCCGGTAGTGTCCAAGGAAAAGTCGATGCTGTTACAGCTCTGTACAACCTTTCTACCTGTACAGAAAATCTCACTCCCATTCTCGCTTCCAGAGCAGTTCCCCCTCTCCTCACCCTCCTCAAAGAATGCAAGAAATATTCCAAGTTCGCTGAGAAAACAACTGCCCTGCTTGAAATTCTATCCGACTTTGAAGAAGGCCGGACTGCAATCTCAGATTCTGATGGTGGGATTCTGACCCTGGTAGAAACTATTGAAGATGGGTCTTTGATCAGCACAGAGCATGCAGTCGGAGCTCTGCTCTCCTTGTGCCAGAGCTGCCGAAATAAGTACAGAGAACTTATCCTTAATGAAGGTGCAATCCCAGGTCTTCTGCGACTAACTGTTGAGGGCACACCTAAAGCTCAAGAGAGAGCCCGAACACTTCTGGACTTGCTCAGAGATTCTCCGCCACAGAAGAGGTTGGCATCAGCGGTTTTGGAGAGCATTGTTTATGACATTGCCACCAGGGTTGACGGAGCAGACAAAGCTGCTGAAACTGCTAAGAGGTTACTGCAGGACATGGTTCACCGAAGTATGGAGCTCAGCATGAAAAGCCTCCAGCTTAGGGCTGTATCATGCACACCTTCGGAAATACCACCTGCATGA 1107 0.4959 MGQDTNQEEETWNQRKQTLIQELARKLIHGDDLESKIQAARDIRKLAKSSVKTRSNFAVAGVIQPLVSMLVSSNFDAREAALLALLNLAVRNERNKVKIVTSGAVPPLVELLKFENGSLRELATAAILTLSASASNKPAIAASGATSLLVQILSSGSVQGKVDAVTALYNLSTCTENLTPILASRAVPPLLTLLKECKKYSKFAEKTTALLEILSDFEEGRTAISDSDGGILTLVETIEDGSLISTEHAVGALLSLCQSCRNKYRELILNEGAIPGLLRLTVEGTPKAQERARTLLDLLRDSPPQKRLASAVLESIVYDIATRVDGADKAAETAKRLLQDMVHRSMELSMKSLQLRAVSCTPSEIPPA* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00608 368 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 103 145 IPR000225 GO:0005515
Eupl02g00608 368 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 185 229 IPR000225 GO:0005515
Eupl02g00608 368 Gene3D - 4 357 IPR011989 -
Eupl02g00608 368 PANTHER U BOX DOMAIN-CONTAINING 19 302 - -
Eupl02g00608 368 SMART arm_5 217 258 IPR000225 GO:0005515
Eupl02g00608 368 SMART arm_5 91 132 IPR000225 GO:0005515
Eupl02g00608 368 SMART arm_5 133 173 IPR000225 GO:0005515
Eupl02g00608 368 SMART arm_5 174 216 IPR000225 GO:0005515
Eupl02g00608 368 SMART arm_5 50 90 IPR000225 GO:0005515
Eupl02g00608 368 FunFam U-box domain-containing protein 4 3 359 - -
Eupl02g00608 368 SUPERFAMILY ARM repeat 16 308 IPR016024 -
Eupl02g00608 368 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 61 103 IPR000225 GO:0005515
Eupl02g00608 368 Pfam Armadillo/beta-catenin-like repeat 135 172 IPR000225 GO:0005515
Eupl02g00608 368 Pfam Armadillo/beta-catenin-like repeat 92 131 IPR000225 GO:0005515
Eupl02g00608 368 Pfam Armadillo/beta-catenin-like repeat 60 89 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00608 Eupl-Chr2 7085746 7089604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00608 17 301 U-box Gene Family AT2G23140 37.979 7.16e-42 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00608 K08332 - nnu:104588697 588.956