Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl02g00605 | ATGGGATCGAAATCAAAGCCCTCTGAGGGAGAGGGAGCGAGCCCTGGGAAAATTTTCATCGGAGGACTAGCTAAGGATACGAGTTTGGCTACATTCACAAAGTATTTCGGTAAATATGGAGAGATAACTGATTCAGTGATAATGAAAGATCGGTACACGGGGCAACCAAGGGGATTTGGATTTATCACCTATGGTGATCCTTCTGTCGTTGACAAAGTTATTCAAGAAACCCATGTCATCAATGGTAAACAAGTTGAGATTAAAAGAACCATTCCAAAAGGCTCTGTACAATCTAAAGATTTCAAAACGAAGAAGATCTTTGTTGGTGGGGTGCCATCAATGGTCAGTGAAGACGAGTTCAAGAGTTTCTTCTCCAAGTATGGGAAGGTGGTGGAACACCAGATTATACGCGATCACGCAACCAACCGATCTCGAGGCTTTGGATTTATAATCTTTGACAGTGAAGAAGTTGTAGATGATATGTTAACCAAAGGAAACATGATTGATATGGCTGGTACTCAGGTGGAGATCAAGAAGGCTGAACCAAAGAAAACGTCAAACCCACCACCTGCAGGACCTGCTCCTGCATTTGGTAGTGACTCTAGGGCTCGTTCTTTCGGTGATGGTCTTGGTGGGTTTGGTGACTCGTATAGTGGTTTTGGCGGCAGCGGATTCGGCCCTGCTCCATATAGGACGCCCGGAGGTCTTGGCAGTAGGCTCGGTGGTTATGGTGGGTATGGTGGTGGCGGCAGTGAATTTGGTAGTGGTTATGGGGGTTTCGGCGGCAGTGGCTTAGGCGAATATCGAGGAGAATCTTCTCTTGGCTATTCCAGTCGTTTTGGACCATATGGTGGAGGATTTGGTGGGGGGTATGGTGGTGGTGGATTAGGTGGTTATGGTCGAGAAAGCGAAGGCTATGGAAGTTACAGTTCAGGTTATGGTGGTAGTTATGATTCTGGCCCTAGCGCTAGTTATGGTGGAGCTGGTGGATTGTATGGAAGTAGGGGAGGTTATAGTGGCAGTAGTCGGTACCATCCATATGCAAGGTAG | 1050 | 0.4695 | MGSKSKPSEGEGASPGKIFIGGLAKDTSLATFTKYFGKYGEITDSVIMKDRYTGQPRGFGFITYGDPSVVDKVIQETHVINGKQVEIKRTIPKGSVQSKDFKTKKIFVGGVPSMVSEDEFKSFFSKYGKVVEHQIIRDHATNRSRGFGFIIFDSEEVVDDMLTKGNMIDMAGTQVEIKKAEPKKTSNPPPAGPAPAFGSDSRARSFGDGLGGFGDSYSGFGGSGFGPAPYRTPGGLGSRLGGYGGYGGGGSEFGSGYGGFGGSGLGEYRGESSLGYSSRFGPYGGGFGGGYGGGGLGGYGRESEGYGSYSSGYGGSYDSGPSASYGGAGGLYGSRGGYSGSSRYHPYAR* | 350 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl02g00605 | 349 | Gene3D | - | 16 | 93 | IPR012677 | - | |
Eupl02g00605 | 349 | MobiDBLite | consensus disorder prediction | 180 | 201 | - | - | |
Eupl02g00605 | 349 | SUPERFAMILY | RNA-binding domain, RBD | 12 | 95 | IPR035979 | GO:0003676 | |
Eupl02g00605 | 349 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN | 5 | 349 | - | - | |
Eupl02g00605 | 349 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 15 | 96 | - | - | |
Eupl02g00605 | 349 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 106 | 166 | IPR000504 | GO:0003723 | |
Eupl02g00605 | 349 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 18 | 79 | IPR000504 | GO:0003723 | |
Eupl02g00605 | 349 | SUPERFAMILY | RNA-binding domain, RBD | 100 | 213 | IPR035979 | GO:0003676 | |
Eupl02g00605 | 349 | Gene3D | - | 94 | 217 | IPR012677 | - | |
Eupl02g00605 | 349 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 97 | 225 | - | - | |
Eupl02g00605 | 349 | SMART | rrm1_1 | 17 | 88 | IPR000504 | GO:0003723 | |
Eupl02g00605 | 349 | SMART | rrm1_1 | 105 | 178 | IPR000504 | GO:0003723 | |
Eupl02g00605 | 349 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 104 | 182 | IPR000504 | GO:0003723 | |
Eupl02g00605 | 349 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 16 | 92 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl02g00605 | Eupl-Chr2 | 7028104 | 7032291 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl02g00605 | 16 | 183 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 24.713 | 2.42e-08 | 53.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl02g00605 | K12741 | - | nnu:104594284 | 382.489 |