Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00605 ATGGGATCGAAATCAAAGCCCTCTGAGGGAGAGGGAGCGAGCCCTGGGAAAATTTTCATCGGAGGACTAGCTAAGGATACGAGTTTGGCTACATTCACAAAGTATTTCGGTAAATATGGAGAGATAACTGATTCAGTGATAATGAAAGATCGGTACACGGGGCAACCAAGGGGATTTGGATTTATCACCTATGGTGATCCTTCTGTCGTTGACAAAGTTATTCAAGAAACCCATGTCATCAATGGTAAACAAGTTGAGATTAAAAGAACCATTCCAAAAGGCTCTGTACAATCTAAAGATTTCAAAACGAAGAAGATCTTTGTTGGTGGGGTGCCATCAATGGTCAGTGAAGACGAGTTCAAGAGTTTCTTCTCCAAGTATGGGAAGGTGGTGGAACACCAGATTATACGCGATCACGCAACCAACCGATCTCGAGGCTTTGGATTTATAATCTTTGACAGTGAAGAAGTTGTAGATGATATGTTAACCAAAGGAAACATGATTGATATGGCTGGTACTCAGGTGGAGATCAAGAAGGCTGAACCAAAGAAAACGTCAAACCCACCACCTGCAGGACCTGCTCCTGCATTTGGTAGTGACTCTAGGGCTCGTTCTTTCGGTGATGGTCTTGGTGGGTTTGGTGACTCGTATAGTGGTTTTGGCGGCAGCGGATTCGGCCCTGCTCCATATAGGACGCCCGGAGGTCTTGGCAGTAGGCTCGGTGGTTATGGTGGGTATGGTGGTGGCGGCAGTGAATTTGGTAGTGGTTATGGGGGTTTCGGCGGCAGTGGCTTAGGCGAATATCGAGGAGAATCTTCTCTTGGCTATTCCAGTCGTTTTGGACCATATGGTGGAGGATTTGGTGGGGGGTATGGTGGTGGTGGATTAGGTGGTTATGGTCGAGAAAGCGAAGGCTATGGAAGTTACAGTTCAGGTTATGGTGGTAGTTATGATTCTGGCCCTAGCGCTAGTTATGGTGGAGCTGGTGGATTGTATGGAAGTAGGGGAGGTTATAGTGGCAGTAGTCGGTACCATCCATATGCAAGGTAG 1050 0.4695 MGSKSKPSEGEGASPGKIFIGGLAKDTSLATFTKYFGKYGEITDSVIMKDRYTGQPRGFGFITYGDPSVVDKVIQETHVINGKQVEIKRTIPKGSVQSKDFKTKKIFVGGVPSMVSEDEFKSFFSKYGKVVEHQIIRDHATNRSRGFGFIIFDSEEVVDDMLTKGNMIDMAGTQVEIKKAEPKKTSNPPPAGPAPAFGSDSRARSFGDGLGGFGDSYSGFGGSGFGPAPYRTPGGLGSRLGGYGGYGGGGSEFGSGYGGFGGSGLGEYRGESSLGYSSRFGPYGGGFGGGYGGGGLGGYGRESEGYGSYSSGYGGSYDSGPSASYGGAGGLYGSRGGYSGSSRYHPYAR* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00605 349 Gene3D - 16 93 IPR012677 -
Eupl02g00605 349 MobiDBLite consensus disorder prediction 180 201 - -
Eupl02g00605 349 SUPERFAMILY RNA-binding domain, RBD 12 95 IPR035979 GO:0003676
Eupl02g00605 349 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 5 349 - -
Eupl02g00605 349 FunFam Heterogeneous nuclear ribonucleoprotein 1 15 96 - -
Eupl02g00605 349 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 166 IPR000504 GO:0003723
Eupl02g00605 349 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 79 IPR000504 GO:0003723
Eupl02g00605 349 SUPERFAMILY RNA-binding domain, RBD 100 213 IPR035979 GO:0003676
Eupl02g00605 349 Gene3D - 94 217 IPR012677 -
Eupl02g00605 349 FunFam Heterogeneous nuclear ribonucleoprotein 1 97 225 - -
Eupl02g00605 349 SMART rrm1_1 17 88 IPR000504 GO:0003723
Eupl02g00605 349 SMART rrm1_1 105 178 IPR000504 GO:0003723
Eupl02g00605 349 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Eupl02g00605 349 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 92 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00605 Eupl-Chr2 7028104 7032291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00605 16 183 Eukaryotic Initiation Factors Gene Family AT1G71770 24.713 2.42e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00605 K12741 - nnu:104594284 382.489