Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00593 ATGGCTGAAGCTTCTAGAACCTTGTACACTACACTAACCCCTCATTTCTCACAAAACCCTTCTCCAATTCGCAGAAACTCAGCTTCCCCGGCGATCTCACGTAGAAACCCAATTCGTTGCACTATCTCAACAGCATCGAACGACAGCCCGAGAGTCACTGTAAACCAGAAGATTCCTTGGGGTTGCGACATCGATTCGTTGGAGAACGCATCGGCGTTGCAAAGATGGTTGTCGGAATCGGGTCTCCCACCCCAGAAAATGGCGATCGAAAGAGTCGAAGTTGGCGAGAGAGGCCTGGTTGCTCTGAAGAATGTAAGGAAGGGAGAGAAATTGCTCTTTGTTCCCCCGTCTCTGGTTATCTCTGCAGATTCGGAGTGGAGCTGCTCAGAAGCTGGTGAAGTGTTAAAAAGAAATTTTGTACCAGACTGGCCATTGCTTGCAACTTACCTGATTAGTGAAGCAAGTATCATGAAGTCTTCAAGATGGAGCAATTATATCTCAGCCCTGCCTCGGCAACCCTACTCACTTTTGTACTGGACACGCTCAGAACTAGACACATACTTGGTAGCCTCACAGATCAGAGAGCGGGCAATTGAAAGGATTAATGATGTAACTGGAACATACAACGATTTAAGGCTCAGGATATTTTCCAAGTATCCTCATTTATTTCCTGAGGAGGTATTCAATATGGAGACGTTCAAATGGTCCTTCGGCATTCTCTTCTCACGCTTGGTTCGATTGCCCTCAATGGATGGAAGGGTTGCCTTAGTCCCTTGGGCAGACATGCTTAATCATAGCTGTGAGGTAGAGACATTTTTGGACTATGATAAATCTTCACAGGGAATTGTCTTTTCAACTGATCGACAGTATCAGCCTGGTGAGCAGGTTTTTATCTCGTATGGCAAGAAATCTAATGGAGAGCTATTGCTATCATATGGATTTGTTCCAAAGGAGGGCACCAACCCGAGCGATTCAGTTGAGTTGTTATTGTCACTCAACAAAACTGACAAATGTTACAAGGAGAAGTTGGAAGCCTTAAGGAAGCATGGTTTGTCTACGTCTCAACGGTTTCCTTTGCAGATCACTGGTTGGCCAGTGGAGTTAATGGCATATGCTTATTTAGCGGTCAGCCCTCCAAACATGAATGAACAGTTTGAAGAGATGGCTGCTGCAGCATCAAATAAAACAACATCCAAGAAGGACATCAGATACCCAGAAATAGAGGAACAAGCTCTACAATTCATCTTGGATAGTTGTGAATCAAGCATATCGAAGTACACCAAATTCTTGCAGGGAAGTGGGTCAATTGATTTGGATGTGACATCTCCAAAGCAAATCAACCGAAAATTGTTTTTGAAACAGCTAGCGATAGACCTTTGTACCAGTGAGCGGAGGATCTTATTTCGTACACAATATATACTACGGAGGAGGTTGAGGGACATGAGAAGCGGCGAATTGAGAGCTCTTAGGATACTGGATGGATTCAGGAAGCTTTTCAAATAA 1503 0.4438 MAEASRTLYTTLTPHFSQNPSPIRRNSASPAISRRNPIRCTISTASNDSPRVTVNQKIPWGCDIDSLENASALQRWLSESGLPPQKMAIERVEVGERGLVALKNVRKGEKLLFVPPSLVISADSEWSCSEAGEVLKRNFVPDWPLLATYLISEASIMKSSRWSNYISALPRQPYSLLYWTRSELDTYLVASQIRERAIERINDVTGTYNDLRLRIFSKYPHLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGIVFSTDRQYQPGEQVFISYGKKSNGELLLSYGFVPKEGTNPSDSVELLLSLNKTDKCYKEKLEALRKHGLSTSQRFPLQITGWPVELMAYAYLAVSPPNMNEQFEEMAAAASNKTTSKKDIRYPEIEEQALQFILDSCESSISKYTKFLQGSGSIDLDVTSPKQINRKLFLKQLAIDLCTSERRILFRTQYILRRRLRDMRSGELRALRILDGFRKLFK* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00593 500 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 331 491 IPR036464 -
Eupl02g00593 500 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 58 438 - -
Eupl02g00593 500 SUPERFAMILY SET domain 69 318 IPR046341 -
Eupl02g00593 500 SMART set_7 85 307 IPR001214 GO:0005515
Eupl02g00593 500 PIRSF RMT_SET 1 497 IPR011192 GO:0009507|GO:0030785
Eupl02g00593 500 MobiDBLite consensus disorder prediction 1 36 - -
Eupl02g00593 500 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 54 314 - -
Eupl02g00593 500 Gene3D - 320 490 IPR036464 -
Eupl02g00593 500 CDD SET_RBCMT 84 315 IPR044431 GO:0016279|GO:0018022
Eupl02g00593 500 Pfam SET domain 97 301 IPR001214 GO:0005515
Eupl02g00593 500 Pfam Rubisco LSMT substrate-binding 334 467 IPR015353 -
Eupl02g00593 500 Gene3D set domain protein methyltransferase, domain 1 38 314 - -
Eupl02g00593 500 ProSiteProfiles SET domain profile. 85 301 IPR001214 GO:0005515
Eupl02g00593 500 FunFam Rubisco methyltransferase family protein 320 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00593 Eupl-Chr2 6879816 6885149 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00593 72 270 NAC Transcription Factor Family AT3G56570 22.059 4.09e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Eupl02g00593 SET 6.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00593 - - nnu:104594273 896.345