Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00573 ATGGAACGTGGAGGCTTCAATGGCAGCCAGAGGCTCTCGAAATCAAGCTCCGGGACGAACTTAGACGAGAACACTGAGCGTGACACAGCATGCACCATACGGGAGCAGGATCGGTACATGCCGATAGCTAATGTGATCAGGATAATGCGGAAGGTACTCCCGACCCACGCCAAGATATCTGATGACGCAAAGGAGACAATCCAAGAGTGTGTATCGGAGTACATCAGTTTCATCACGAGCGAGGCTAACGAGCGGTGCCAGAGGGAGCAGCGGAAGACAATCACAGCCGAGGACGTGTTGTGGGCCATGACCAAGCTTGGGTTCGATCAGTACATTCAACCTCTCACTGTCTTCCTCCAGCACTACCGTGAGTACGAGGGTGATCGTGGGTCAATAAGAGGAGACCCGTTGATGAAGAGGAGTTTAGATTTGCCCACCCCATTAGCTGCTGCTGCAGCAGCTTATGCACCGGCATTTCACATGGCTCATCATCAGGGAATGTTCGGACAAACAATGGGTGGTGCGAACCCATCCCATGTTGCAATGGCTAGCTTTGATCCTTACGCTCCCTATAAGTGA 579 0.5233 MERGGFNGSQRLSKSSSGTNLDENTERDTACTIREQDRYMPIANVIRIMRKVLPTHAKISDDAKETIQECVSEYISFITSEANERCQREQRKTITAEDVLWAMTKLGFDQYIQPLTVFLQHYREYEGDRGSIRGDPLMKRSLDLPTPLAAAAAAYAPAFHMAHHQGMFGQTMGGANPSHVAMASFDPYAPYK* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00573 192 PRINTS CCAAT-binding transcription factor subunit A signature 67 85 - -
Eupl02g00573 192 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Eupl02g00573 192 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Eupl02g00573 192 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 153 IPR027113 GO:0001228|GO:0006355|GO:0016602
Eupl02g00573 192 ProSitePatterns NF-YB/HAP3 subunit signature. 70 86 IPR003956 GO:0005634|GO:0006355|GO:0043565
Eupl02g00573 192 MobiDBLite consensus disorder prediction 8 26 - -
Eupl02g00573 192 MobiDBLite consensus disorder prediction 1 32 - -
Eupl02g00573 192 SUPERFAMILY Histone-fold 36 133 IPR009072 GO:0046982
Eupl02g00573 192 Gene3D Histone, subunit A 28 141 IPR009072 GO:0046982
Eupl02g00573 192 FunFam Nuclear transcription factor Y subunit B-6 28 143 - -
Eupl02g00573 192 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 39 103 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00573 Eupl-Chr2 6593197 6595585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00573 1 178 CCAAT-HAP3 Transcription Factor Family AT5G47670 51.675 1.56e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Eupl02g00573 CBFD_NFYB_HMF 8.6e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00573 K08065 - nnu:104594257 274.248