Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00567 ATGGCGGATTCCGATAATGACTCCGGCGGTCAGTACAACAACGCGAACAGCGACTTCTCGCCGCGAGAGCAGGACAGGTTCCTGCCCATCGCTAACGTGAGCCGGATCATGAAGAAAGCGCTCCCTGCCAACGCAAAGATCTCCAAAGACGCTAAAGAGACGGTACAAGAGTGTGTATCGGAGTTCATAAGCTTTATCACTGGAGAAGCTTCCGATAAGTGTCAAAGAGAGAAGCGAAAGACTATCAACGGTGATGATCTTCTCTGGGCCATGACCACGCTAGGTTTCGAAGAGTACGTGGAGCCATTGAAGATATATCTCCAGAAGTTTCGAGAGATGGAAGGAGAGAAGACCTCGATGGGAAGACAAGGCGAAAAGGACGGCTCCAGTGGTGGTGGCACTGGAGGTGGAGGAGCCGCCGGTAGTGGCAATGGCGGTGTTGTAAATTCTGGCAACAGTGGGGGTGGTTTCAATGTAGGGAGTATGTATGGTGGAATGCAATCGAGCGTGATGATGATGGGACATCAAGGGCAGATGTATGGCTCCGGTTCGTATCATCATATGGCTGTAGGTGGCAGTGGGCCCGGGAAAGGCAGTTCGGGCAGCACGGGTAGTGCTGGTGGTGGAGGTTCGTCTGGCAGACCAAGGTAA 651 0.53 MADSDNDSGGQYNNANSDFSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKFREMEGEKTSMGRQGEKDGSSGGGTGGGGAAGSGNGGVVNSGNSGGGFNVGSMYGGMQSSVMMMGHQGQMYGSGSYHHMAVGGSGPGKGSSGSTGSAGGGGSSGRPR* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00567 216 MobiDBLite consensus disorder prediction 1 21 - -
Eupl02g00567 216 Gene3D Histone, subunit A 16 133 IPR009072 GO:0046982
Eupl02g00567 216 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Eupl02g00567 216 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Eupl02g00567 216 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Eupl02g00567 216 SUPERFAMILY Histone-fold 24 130 IPR009072 GO:0046982
Eupl02g00567 216 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Eupl02g00567 216 MobiDBLite consensus disorder prediction 188 216 - -
Eupl02g00567 216 FunFam Nuclear transcription factor Y subunit B-3 16 135 - -
Eupl02g00567 216 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Eupl02g00567 216 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 145 IPR027113 GO:0001228|GO:0006355|GO:0016602
Eupl02g00567 216 MobiDBLite consensus disorder prediction 115 147 - -
Eupl02g00567 216 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00567 Eupl-Chr2 6544298 6545874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00567 1 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.938 2.73e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Eupl02g00567 CBFD_NFYB_HMF 2.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00567 K08065 - nnu:104594247 297.745