Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00556 ATGAACAGAGGGACTAGTTCTGGGAGTAATTCTGTTCGATCCAAACACAGTACTCGTTTGGTTGCTAAGACCACCGCTGATGCGAAGCTTCATGTAGACTTTGAGGAGTCCAAACAGTTGTTCGATTACTCAACTTCAGTTGATTTCAACGTCTCAAGTGCTGACAGCAATGTCCCCTCTTCCTCAGTGTCAGAATACCTCCAGCGGATGCAGAGGGGAAAGCTTATCCAACCCTTCGGCTGTACAATTGCCGTCAAAGAACAGACCTTTGCTGCTCTCGCCTACAGCGAGAATGCCCCCGAGATGTTGGACTTAGCCCCACAAACAGTTCCCAGCATCGAACAACAAGAAGCTCTGACGATCGGAATGGATGTTCGGACCCTCTTCCGGTCCTCAAGCGCCGTGGCCTTGCAGAAAGCTGCCAATTTTGGAGAAGTTAATCTCCTCAATCCAATATTGGTACACTGTAAGAACTCAGGTAAGCCCTTTTACGCGATTATACACCGGATAGATGTGGGGTTGGTTATAGATTTGGAGCCAGTGAGTCCTGCTGAGGTGCCAGTAGCTGCTGCTGGGATATTGAAATCATATAAGCTCTCAGCCAAAGCTATCTCCAGATTGCAATCTTTGCCAAGTGGAAATATCTCACTGTTGTGTGATGTATTGGTTCAGGAAGTTAGCGATCTAACAGGTTATGATAGGGTGATGGTGTATAAGTTTCATGAAGATGAACATGGAGAAGTGGTCGCAGAGTGCCTGAGATCCAATTTGGAACCTTATCTCGGCTTTCATTATCCGGCTACTGATATACCACAAGCCTCAAGGTTCCTCTTCATGAGGAACAAGGTTAGGATGATTTGCGACTGTTCTGCCCGTCCGGTTAAAGTAATCCAAGACAAGAGCCTGGCACAGCCTTTGAGTCTTTGTGGGTCTACACTGAGAGCTCCTCATGGGTGTCATGCACAATACATGGCAAATATGGGTTCCATAGCGTCACTTGTGATGTCTGTGACAATCGACGAGAATGATGATGAGATTCAAACTGACCAGCAAAAGGGAAGGGTGCTGTGGGGGTTGGTTGTCTGCCATCACACAAGCCCTAGGTTTGTTCCATATCCTCTGAGGCATGCCTGTGAGTTCTTGATTCAAGTCTTTGGTATACAGCTTAACAAGGAAGTGGAGTTGGCAACTCAATTGAGGGAGAAGCATATTCTGCGAACGCAGACTGTGCTTTGTGACATGCTCCTTAGGGATGCTCCAGTGGGGATTGTTACTCAATCACCAAATGTGATGGACCTTGTTAAGTGTGATGGTGCTGCACTGTATTACAAGAATCAATTTTGGCTGCTTGGGTTAACCCCTACAGAGGCACAAATAAGAGATATAGCTGGATGGATTCTTGAGCACCATGATGGGAGTACAGGTGTAAGTATAGATAGCCTCATGGAAGCTGGCTATCCAGGTTCTTCAGTTCTTGGGGATGTAGTTAGTGGAATGGCTGCCATTAAGATTACTTCAAAGGACTTCCTCTTTTGGTTCCGATCCCATACAGCAAAAGAGATCAAGTGGGGTGGTGCAAAACATGACCATGTCGATAAGGATGACGGCAGGAAGATGCACCCTCGATCGTCATTCAAGGCTTTCCTGGAAGTGGTTAAGCGGCGGTGTCTACCTTGGGAAGACGTCGAGATGGATGCCATCCACTCCTTACAGCTGATATTGCGAGGATCCTTGAAAGATGAGACTGTGAACGACTCCAAGACAATCGTGAATGCGTTGATGGTTGATGCAAGGATCCAAGGGGTGGATGAATTATGTAATGTTACAAACGAGATGGTTCGCCTTATAGAGACTGCTTCAGTCCCCGTTTTGGCTGTTGATGCCTCTGGTAATATAAATGGATGGAATACCAAAGCAGCTGAGTTGACAGGATTGTTTGTGCAGCAAGCTATCGGCATGCCCTTGATCAATCTTGTTGAAGATGTTTCAGTGGAAGTGGTGAAGAACATACTCTACTTGGCTTTGCAAGGCAAAGAAGAGCAGAACATCGAAATCAAGTTTAAAACATTCGGTCCTCAAGAAAATAACGGTCCTGTAATTTTGGTGGTTAATGCATGTTGTAGCCGGGACACAAATGAAAAGGTTGTAGCAGTTTGCTTTGTTGGGCAAGATGTAACAGGGCAAAAGGTGGTGATGGACAAATACACCCGTATACAAGGCGATTACATTGCAGTTGTGCGGAGCCCGTCTGCACTTATTCCTCCAATATTTATGATAGATGTGTATGGTTGTTGCTTTGAGTGGAATAATGCCATGCAAATACTGTCCGGTTTGAAGAGGGAAGAAGCCATTGATAGGATACTTGTTGGGGAAGTGTTCAGTCTTCATAATTTTGGTTGCCGAGTCAAAGACCAAGACACATTGACCAAGCTCATGATATTACTGAATGGTGTAATTGCAGGCCAAGATGATGATAAATTGATGTTCGGGTTCTTTGACCAGCAGGGTGATTATGTAGAAGCCTTACTCTCTGCAAACAAGAGGATGGATGCAGAGGGTAGGATAACTGGGGTTCTCTGCTTTTTACATGTGGCCAACCCTGAACTTCAATATGCTTTGCAGGTGCAGAGAATGTCAGAACAGGCTGCAATGAATAGCTTAAAGGAATTGGCGTATATTCGTCGGGAAATCAGAACCCCACTTTACGGGATTATGTTTACTTGCAATCTGATGGAGGCTTCTGTTTTGACTCAAGAGCAGAAGAAACTTCTAAGGACGAGCACTCTGTGTCGGGAACAATTAACCAAGATCTCAGATGGCACTGATTTAGAAAGTATCGAAGAGTGCTATTTGGAAATGAAGACCGTCGAATTCAACCTCAGGGAAGCTTTAGAGGCAGTCTTAATTCAAGGGATGCCTCTGAGCAGAGAGCGGCAGGTGCAACTCATTCATGATTTTCCAGCAGAAGTATCCTCCATGTACTTATATGGCGATAATTTGAGGCTTCAGCAAGTCCTGTCCAACTTCTTGACGAATGTGCTCCTGTTCACCCAGGCATCCAAAGAATCATCGGTTGTGCTCAGGGTCATTCCTAGAAAGCAACATATAGGGACTGGAGTACACATTGTTCATCTTGAAATTCGGATCACCCACCCAGCTCCGGGCATTCATGACGCTTTGATTCAAGAGATGTTTCACCACAGGCAAAGTGTCTCAAGGGAAGGTCTTGCCTTATACATCAGCCAGAAGCTTGTCAAGATCATGAATGGCACTGTACGGTATCTTAGGGAAGAAAAAAAATCATCCTTCATCATTCTTGTTGATTTCCCCTTGGTTCATCATGTCGAGCCTGGGTGA 3357 0.454 MNRGTSSGSNSVRSKHSTRLVAKTTADAKLHVDFEESKQLFDYSTSVDFNVSSADSNVPSSSVSEYLQRMQRGKLIQPFGCTIAVKEQTFAALAYSENAPEMLDLAPQTVPSIEQQEALTIGMDVRTLFRSSSAVALQKAANFGEVNLLNPILVHCKNSGKPFYAIIHRIDVGLVIDLEPVSPAEVPVAAAGILKSYKLSAKAISRLQSLPSGNISLLCDVLVQEVSDLTGYDRVMVYKFHEDEHGEVVAECLRSNLEPYLGFHYPATDIPQASRFLFMRNKVRMICDCSARPVKVIQDKSLAQPLSLCGSTLRAPHGCHAQYMANMGSIASLVMSVTIDENDDEIQTDQQKGRVLWGLVVCHHTSPRFVPYPLRHACEFLIQVFGIQLNKEVELATQLREKHILRTQTVLCDMLLRDAPVGIVTQSPNVMDLVKCDGAALYYKNQFWLLGLTPTEAQIRDIAGWILEHHDGSTGVSIDSLMEAGYPGSSVLGDVVSGMAAIKITSKDFLFWFRSHTAKEIKWGGAKHDHVDKDDGRKMHPRSSFKAFLEVVKRRCLPWEDVEMDAIHSLQLILRGSLKDETVNDSKTIVNALMVDARIQGVDELCNVTNEMVRLIETASVPVLAVDASGNINGWNTKAAELTGLFVQQAIGMPLINLVEDVSVEVVKNILYLALQGKEEQNIEIKFKTFGPQENNGPVILVVNACCSRDTNEKVVAVCFVGQDVTGQKVVMDKYTRIQGDYIAVVRSPSALIPPIFMIDVYGCCFEWNNAMQILSGLKREEAIDRILVGEVFSLHNFGCRVKDQDTLTKLMILLNGVIAGQDDDKLMFGFFDQQGDYVEALLSANKRMDAEGRITGVLCFLHVANPELQYALQVQRMSEQAAMNSLKELAYIRREIRTPLYGIMFTCNLMEASVLTQEQKKLLRTSTLCREQLTKISDGTDLESIEECYLEMKTVEFNLREALEAVLIQGMPLSRERQVQLIHDFPAEVSSMYLYGDNLRLQQVLSNFLTNVLLFTQASKESSVVLRVIPRKQHIGTGVHIVHLEIRITHPAPGIHDALIQEMFHHRQSVSREGLALYISQKLVKIMNGTVRYLREEKKSSFIILVDFPLVHHVEPG* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00556 1118 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 214 383 IPR016132 -
Eupl02g00556 1118 Gene3D PAS domain 606 729 - -
Eupl02g00556 1118 ProSitePatterns Phytochrome chromophore attachment site signature. 314 323 IPR013516 -
Eupl02g00556 1118 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 997 1109 IPR003594 -
Eupl02g00556 1118 Pfam Phytochrome region 406 580 IPR013515 GO:0006355|GO:0009584
Eupl02g00556 1118 PIRSF Phytochrome_conventional 1 1117 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Eupl02g00556 1118 SMART pas_2 610 676 IPR000014 -
Eupl02g00556 1118 SMART pas_2 740 809 IPR000014 -
Eupl02g00556 1118 SMART HKATPase_4 997 1111 IPR003594 -
Eupl02g00556 1118 CDD HisKA 890 937 IPR003661 GO:0000155|GO:0007165
Eupl02g00556 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 755 860 IPR035965 -
Eupl02g00556 1118 PANTHER OS08G0260000 PROTEIN 62 947 - -
Eupl02g00556 1118 SMART HisKA_10 886 949 IPR003661 GO:0000155|GO:0007165
Eupl02g00556 1118 CDD PAS 619 725 IPR000014 -
Eupl02g00556 1118 Gene3D - 929 1105 IPR036890 -
Eupl02g00556 1118 NCBIfam PAS domain S-box protein 615 729 IPR000014 -
Eupl02g00556 1118 CDD HATPase_Phy-like 996 1109 IPR044767 -
Eupl02g00556 1118 Pfam PAS fold 66 181 IPR013654 GO:0006355
Eupl02g00556 1118 PRINTS Phytochrome signature 703 720 IPR001294 GO:0006355|GO:0009584
Eupl02g00556 1118 PRINTS Phytochrome signature 611 627 IPR001294 GO:0006355|GO:0009584
Eupl02g00556 1118 PRINTS Phytochrome signature 630 645 IPR001294 GO:0006355|GO:0009584
Eupl02g00556 1118 PRINTS Phytochrome signature 508 527 IPR001294 GO:0006355|GO:0009584
Eupl02g00556 1118 PRINTS Phytochrome signature 129 151 IPR001294 GO:0006355|GO:0009584
Eupl02g00556 1118 PRINTS Phytochrome signature 541 559 IPR001294 GO:0006355|GO:0009584
Eupl02g00556 1118 PRINTS Phytochrome signature 229 248 IPR001294 GO:0006355|GO:0009584
Eupl02g00556 1118 PRINTS Phytochrome signature 723 743 IPR001294 GO:0006355|GO:0009584
Eupl02g00556 1118 PRINTS Phytochrome signature 423 443 IPR001294 GO:0006355|GO:0009584
Eupl02g00556 1118 PRINTS Phytochrome signature 314 335 IPR001294 GO:0006355|GO:0009584
Eupl02g00556 1118 Gene3D - 398 571 IPR043150 -
Eupl02g00556 1118 ProSiteProfiles PAS repeat profile. 750 793 IPR000014 -
Eupl02g00556 1118 Pfam PAS fold 611 725 IPR013767 GO:0006355
Eupl02g00556 1118 Pfam PAS fold 751 863 IPR013767 GO:0006355
Eupl02g00556 1118 ProSiteProfiles PAS repeat profile. 608 678 IPR000014 -
Eupl02g00556 1118 FunFam Phytochrome 950 1111 - -
Eupl02g00556 1118 SMART gaf_1 214 403 IPR003018 GO:0005515
Eupl02g00556 1118 Gene3D - 195 554 IPR029016 -
Eupl02g00556 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 70 182 IPR035965 -
Eupl02g00556 1118 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 942 1106 IPR036890 -
Eupl02g00556 1118 Pfam GAF domain 215 393 IPR003018 GO:0005515
Eupl02g00556 1118 SUPERFAMILY GAF domain-like 401 578 - -
Eupl02g00556 1118 SUPERFAMILY GAF domain-like 195 390 - -
Eupl02g00556 1118 FunFam Phytochrome 604 735 - -
Eupl02g00556 1118 FunFam Phytochrome 398 533 - -
Eupl02g00556 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 613 721 IPR035965 -
Eupl02g00556 1118 Gene3D PAS domain 72 317 - -
Eupl02g00556 1118 ProSiteProfiles Histidine kinase domain profile. 892 1113 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00556 Eupl-Chr2 6431648 6445580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00556 5 1112 Histidine Kinase Gene Family AT5G35840 62.860 0.0 1481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00556 - - msin:131229686 1773.83