Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00541 ATGGCTATTTCTTCAATCTCTGCAACTCTTCATCTTCTGCCACTCTGCAACTCCAACATTTCGTCTAAATACAAACCCTCGGTCTTCTCTTTACCCTCTTATGTCTTAAAGCCTAAAACCGTGAAATTAACTCATTCATCTAGGGTTTTTGCTGCACCAGAGCTTCTTGAATCTGAAGAAACCATAGACGCACCTCTTGAAACCCTAGATGGATCCGATTTGACCAACTACGAGGTTGGAGGGTCTGAAATTCCGGGTTCTTCTCGGATCGCTATAGGTGAAGATGTCGACAAGATGGCGCCAAAGCAGAAAATTAGAATTAAACTGAGGTCTTACTGGGTGCCCCTGATAGAGGACTCATGCAAGCAGATAATGGATGCTGCAAGGACGACCAATGCGAAGACCATGGGTCCTGTACCTTTACCAACCAAGAAGCGAATCTATTGTGTGCTCAAATCCCCACATGTGCACAAAGATGCAAGGTTCCATTTTGAGATCCGGACCCACCAGCGTCTCATTGATATTCTCTACCCAACTGCCCAAACAATAGATTCTTTGATGCAGCTTGACCTCCCTGCGGGGGTGGATGTAGAGGTCAAACTATGA 606 0.4554 MAISSISATLHLLPLCNSNISSKYKPSVFSLPSYVLKPKTVKLTHSSRVFAAPELLESEETIDAPLETLDGSDLTNYEVGGSEIPGSSRIAIGEDVDKMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00541 201 Gene3D Ribosomal protein S10 domain 92 201 IPR036838 -
Eupl02g00541 201 SMART Ribosomal_S10_2 106 200 IPR027486 -
Eupl02g00541 201 PRINTS Ribosomal protein S10 family signature 139 154 IPR001848 GO:0003735|GO:0005840|GO:0006412
Eupl02g00541 201 PRINTS Ribosomal protein S10 family signature 160 174 IPR001848 GO:0003735|GO:0005840|GO:0006412
Eupl02g00541 201 PRINTS Ribosomal protein S10 family signature 104 117 IPR001848 GO:0003735|GO:0005840|GO:0006412
Eupl02g00541 201 FunFam 30S ribosomal protein S10 99 201 - -
Eupl02g00541 201 SUPERFAMILY Ribosomal protein S10 104 201 IPR036838 -
Eupl02g00541 201 Hamap 30S ribosomal protein S10 [rpsJ]. 102 201 IPR001848 GO:0003735|GO:0005840|GO:0006412
Eupl02g00541 201 ProSitePatterns Ribosomal protein S10 signature. 128 143 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Eupl02g00541 201 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 57 201 IPR001848 GO:0003735|GO:0005840|GO:0006412
Eupl02g00541 201 Pfam Ribosomal protein S10p/S20e 106 200 IPR027486 -
Eupl02g00541 201 NCBIfam 30S ribosomal protein S10 103 200 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00541 Eupl-Chr2 6295742 6300981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00541 103 201 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 31.000 2.21e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00541 K02946 - msin:131229006 301.212