Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00502 ATGGAATCGGATCTTGGTAAGCTTTTCATTGGTGGGATTTCATGGGACACAAATGAAGATCGCCTGAAGGAATACTTCAAAACTTATGGAGAAGTTGTGGAGGCTGTGATCATGAAAGATCGGACCACGGGTCGTGCCCGTGGTTTTGGTTTTGTCGTCTTTGCAGACCCTGCTGTGGCAGAGAGAGTTGTTATGGATAAGCACCAGATAGATGGTAGAACGGTTGAGGCGAAGAAGGCTGTTCCTAGGGATGATCAACACATTCTGAATAGAAACAATAGTAGCATTCATGGATCGCCGGGTACTGCCCGCACAAAAAAGATATTCGTAGGAGGTTTAGCATCTACTGTCACGGAGAGCGACTTCAAGAAGTACTTCGAACAGTTTGGGACAATTACAGATGTCGTTGTGATGTACGACCACAATACCCAAAGGCCAAGAGGCTTCGGATTCATCACTTATGATTCAGAGGATGCTGTGGAGAAAGTGTTGCTCAAAACCTTTCATGAACTGAATGGTAAAATGGTAGAGGTCAAACGGGCTGTCCCCAAAGAGTTATCCCCTGGCCCCAGCCGGAGCCCACTGGGTGGATATAACTATGGTCTGAGTAGGGTCAATAGCTTCCTTAATGGCTATACTCAGGGGTACAATCCGAGCTCGGTTGGAGGCTATGGACTTAGGATGGATGGTAGATTCAGTCCAGTTGCCAGTAATCGGAGTGGGTTTCCTCCATTTGGTCCTCCTGGTTATGGAATGGGTGTGAATTTTGAGCCTGGGTTGAGCCCAAGCTATGGGGGGAGTGCAAACATCAATGCTAATCTTGGCTATGGACGAGGATTGAACCCTTATTATAGTGGGAGTTCAAATAGATATGGTAGTCCTATTGGCTACGGTGGGGGTAATGGAGGAAGTGGTTCCGTTTTAAGCCCAACAACTCGAAATGTATGGGGGAATGGGGGGCTTAATTATGCCACAAACTCCCCAAGCTCTAGTGCTTACATGGGTTCTGCAAGTGGAACTATTGGAGGTGCCTTTGGCAACAGTGGAGCAAATTGGGGTTCCTCTGCTTCTATTTCGGCTCAAGGTGGAGGGAGTGGTTCTGGCTATACTAGTGGAAATCTTGGTTATGGAAGTGGGGATAGCAGTTACGGGTTGGGAGTGGGAGGGTATGGTAGAAACAGCGGAACTGGTGTGGCCCCTACATCATCGTATGCCACATCTAATGGTGGTTATGATGGGTCATATGGAGACTTTTATAGCAGTGGTTCAATTTATGGGGACCCCACTTGGCGTTCTGCAACTTCCGAGCTAGATGGTTCTGGTCCATTTAGCTATGGGCTTGGCAATGCAGCTTCGGATGTTACGGCTAAAAGTTCTGCGGGTTATGTTGGTGGTTATAGTGTTACCAATAGACAATCAAATAGAGGAATTGCTACCTAG 1440 0.4729 MESDLGKLFIGGISWDTNEDRLKEYFKTYGEVVEAVIMKDRTTGRARGFGFVVFADPAVAERVVMDKHQIDGRTVEAKKAVPRDDQHILNRNNSSIHGSPGTARTKKIFVGGLASTVTESDFKKYFEQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGGYNYGLSRVNSFLNGYTQGYNPSSVGGYGLRMDGRFSPVASNRSGFPPFGPPGYGMGVNFEPGLSPSYGGSANINANLGYGRGLNPYYSGSSNRYGSPIGYGGGNGGSGSVLSPTTRNVWGNGGLNYATNSPSSSAYMGSASGTIGGAFGNSGANWGSSASISAQGGGSGSGYTSGNLGYGSGDSSYGLGVGGYGRNSGTGVAPTSSYATSNGGYDGSYGDFYSSGSIYGDPTWRSATSELDGSGPFSYGLGNAASDVTAKSSAGYVGGYSVTNRQSNRGIAT* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00502 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 475 - -
Eupl02g00502 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Eupl02g00502 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Eupl02g00502 479 Gene3D - 6 88 IPR012677 -
Eupl02g00502 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Eupl02g00502 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Eupl02g00502 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Eupl02g00502 479 SMART rrm1_1 107 179 IPR000504 GO:0003723
Eupl02g00502 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Eupl02g00502 479 CDD RRM2_Hrp1p 107 184 - -
Eupl02g00502 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Eupl02g00502 479 SUPERFAMILY RNA-binding domain, RBD 103 203 IPR035979 GO:0003676
Eupl02g00502 479 SUPERFAMILY RNA-binding domain, RBD 4 98 IPR035979 GO:0003676
Eupl02g00502 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Eupl02g00502 479 Gene3D - 102 189 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00502 Eupl-Chr2 5787871 5792128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00502 2 185 Eukaryotic Initiation Factors Gene Family AT2G36660 30.102 4.29e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00502 K14411 - ming:122065992 743.421