LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl02g00472	ATGTCTCTCAGAGAAAGTTCGATCGATTGCGTCCATCAACGCCTCAATTGGATCTCATCCAAGCGCAAATTGGACGATTATGGCCCCGCCGACGAAGAATTATCTGATTTAGTCTCTGTAAGGATGAAGAAAGATGAAGTCGATGCAGTCAATTCCTCTGCTAGATTAGGGTACAACGACATCGAAGAAGAAACCGATGTGGGAATTAGGGTTTCTGATGCTCAATCGGGCGGAGAGATCATACGAGCGACGAAATCTTTACATTTCTTTGTGCGGATGATATCGGGGGGTAATACGATCGTCATACATGCGAATTCCGATGATTCGGTAGAATCTGTTCACGAACAGATTCGTACGATGACTGGAATTCCGATTATTGAGCAACGGTTGATTTACAGGGGGAAACAGCTCCAGTGGGAGCAATCGCTTGCTGAGTGTTCGATCCAGAATGACGCCGGGCTTCAATTGGTCGGACGGATGAGGAGCACGGAGTACCCGCGGACTTGGCAGGTCGTCAACGACTTGATATCCTCTATATGTCGCCTCTGTAGGGGGGATTCTCTCCGGTCATCAAAAAACGTTAAATTCCGCGTTAAGGAATTCTTGAGGATGACTCACACAAACGATCTTGAGATGTCTTGGGGGCATCTCCAGATTTTTAAGTCCGCTGGTGCGCCGACTGCTTTAGTCATGTTGTTCCTCTCCCCCATAAAAGGTAATAAGGAGTGCGCAGAAGAGTCAATTCGGCTCTTTCTCACTCCCAACATTGACTTCTTACCGAAATCCGTACAAACCCAATGTGCCCCGATAGTGTTAGAGATCTGTAAGTTGCTTACTAGAACTGCTCATAATGATCCACTGTACATGTCCTGTCGGAACACTCTCGGGTCTTTACTGGAAACTATGGGGGTTGCACATGGGTCAAGATACCTTGATAATGCAAAGGCGTCTGCTGTAATTAGGGAGTTTGTCCCATTTATTCGTGAGCTGGCAAGTAGGATGTCTATGGGTTTGCAGTCAAGTATGAACTCAGCTCCGTGCACAGTGACATCGTTGGCAGGTGATGTCCGTGATTTTACTGCCTTCTTGGTCCCCCTGCGTAGGGCAATTGAGGACTATGTGGGTGGGGATGCTCACCTCCCTATATGTTTGGATGATAAGCGTCCGTGTTATGTGGTTGAGATTGTATCGCTCCATGCTATTTTCTTGGACTTGCTGGAAAAAATCAATCAATGCCTGAAGAAAGTGGAGGAGATTTTGGTTGCAAAAGATGCAGGAGAAAGCGAAAGCCTTCAGCCTGGGTGGTCGCAGTATCTTGCTATTCTGAAGGAATTGAATTGCCTTTCTAAACTTTATGAAGGTGCTGAAGAAAAACTTTGCTCTGTTTTGAAGTCAAGGCGGGTTTCATTAAATGCTCTAATTAGGCATGCAAAGCGGAGTGATGATCATCGTTGGCTTCTTGATCATAAAGACATGATGGATTTCGAATCTAGGAGGCATTTGGTGATGATGATGTTTCCTGATGTGAAAGATGAATACGAGGAGCTGCACGAAATGCTCATTGACAGGTCGCAGTTATTGTCAGAGTCATTTGAGTATATAGCTCATGCGGATCCTGAAGCATTGCGCGGTGGCCTTTTCATGGAGTTTAAAAATGAGGAAGCTACAGGTCCTGGTGTGTTGCGGGAGTGGTTTTGCTTGGTTTGCCAATCAATATTCAATCCACAAAATGCCCTATTTCTAGCCTGCCCAAATGACTGTAGGAGGTTCTTTCCCAATCCAGCATCTAAAGTGGATCCCTTGCACCTTGACTATTTTGGCTTCTGCGGTCGGGTGATTGCATTAGCCTTGATGCATAAAGTGCAAGTAGGCGTTGTATTTGATCGCGTGTTTTTCTTGCAATTAGCTGGAAAAGTAGTGTCTTTGGAAGATGCCCGGGATGCAGATCCATGCTTGTATATGAGCTGCAAAAAGATTTTGGAGATGGACTCTGATATTTTGGATTCAGATGCTCTGGGACTAACATTTGTGAGAGAAATTGAAGAGTTAGGGTCCAGGAAAGTTGTGGAGCTTTGCCCTAGAGGGAAGGGCATTGTCGTGAACAGCAAAAATAGAGAGGAATATGTGAACCTTCTTATTCAACATCGATTCGTCACATCTATCACCGAACAGTTATCCCATTTTGCCCAAGGTTTTGCTGATATTCTTTGTAATTCAGAACTCCGGAACTTCTTTTTCCAAAGTTTAGATCATGAAGATCTTGATCGTATGTTGCATGGAAGCGATAGAGTTATTTGTCTAAAGGATTGGAAGGCACACACTGAGTACAATGGCTACAAAGAAACTGACCGCGAAATCTGCTGGTTTTGGAAGGCTGTCGAGGGTATGTCTGCAGAGCAACGAAGAGCACTTCTCTTTTTTTGGACCTCAGTGAAGTACCTACCGGTAGAGGGTTTTGGTGGCTTGCCATCTCGCTTGTACATCTTCAAGACATCAGACTCCCATGATCGCCTGCCGTCGTCGCACACATGCTTCTACCGGTTGTGTCTCCCACCTTACCCATCTCTAGCTGTCATGCAGAGTTGTCTCCGTATCATCACCCAAGAACATGTGAGCTGCAGCTTTGGGACATGGTGA	2637	0.4554	MSLRESSIDCVHQRLNWISSKRKLDDYGPADEELSDLVSVRMKKDEVDAVNSSARLGYNDIEEETDVGIRVSDAQSGGEIIRATKSLHFFVRMISGGNTIVIHANSDDSVESVHEQIRTMTGIPIIEQRLIYRGKQLQWEQSLAECSIQNDAGLQLVGRMRSTEYPRTWQVVNDLISSICRLCRGDSLRSSKNVKFRVKEFLRMTHTNDLEMSWGHLQIFKSAGAPTALVMLFLSPIKGNKECAEESIRLFLTPNIDFLPKSVQTQCAPIVLEICKLLTRTAHNDPLYMSCRNTLGSLLETMGVAHGSRYLDNAKASAVIREFVPFIRELASRMSMGLQSSMNSAPCTVTSLAGDVRDFTAFLVPLRRAIEDYVGGDAHLPICLDDKRPCYVVEIVSLHAIFLDLLEKINQCLKKVEEILVAKDAGESESLQPGWSQYLAILKELNCLSKLYEGAEEKLCSVLKSRRVSLNALIRHAKRSDDHRWLLDHKDMMDFESRRHLVMMMFPDVKDEYEELHEMLIDRSQLLSESFEYIAHADPEALRGGLFMEFKNEEATGPGVLREWFCLVCQSIFNPQNALFLACPNDCRRFFPNPASKVDPLHLDYFGFCGRVIALALMHKVQVGVVFDRVFFLQLAGKVVSLEDARDADPCLYMSCKKILEMDSDILDSDALGLTFVREIEELGSRKVVELCPRGKGIVVNSKNREEYVNLLIQHRFVTSITEQLSHFAQGFADILCNSELRNFFFQSLDHEDLDRMLHGSDRVICLKDWKAHTEYNGYKETDREICWFWKAVEGMSAEQRRALLFFWTSVKYLPVEGFGGLPSRLYIFKTSDSHDRLPSSHTCFYRLCLPPYPSLAVMQSCLRIITQEHVSCSFGTW*	879

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl02g00472	878	Pfam	HECT-domain (ubiquitin-transferase)	567	870	IPR000569	GO:0004842
	Eupl02g00472	878	Gene3D	Hect, E3 ligase catalytic domain	638	720	-	-
	Eupl02g00472	878	SUPERFAMILY	Ubiquitin-like	89	174	IPR029071	-
	Eupl02g00472	878	Pfam	Ubiquitin family	90	161	IPR000626	GO:0005515
	Eupl02g00472	878	ProSiteProfiles	Ubiquitin domain profile.	87	163	IPR000626	GO:0005515
	Eupl02g00472	878	FunFam	E3 ubiquitin-protein ligase UPL5 isoform A	638	720	-	-
	Eupl02g00472	878	Gene3D	-	81	173	-	-
	Eupl02g00472	878	Gene3D	Hect, E3 ligase catalytic domain	764	876	-	-
	Eupl02g00472	878	FunFam	E3 ubiquitin-protein ligase UPL5	762	877	-	-
	Eupl02g00472	878	PRINTS	Ubiquitin signature	140	161	IPR019956	-
	Eupl02g00472	878	PRINTS	Ubiquitin signature	119	139	IPR019956	-
	Eupl02g00472	878	PRINTS	Ubiquitin signature	98	118	IPR019956	-
	Eupl02g00472	878	PANTHER	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	88	876	-	-
	Eupl02g00472	878	SMART	hect_3	536	876	IPR000569	GO:0004842
	Eupl02g00472	878	SUPERFAMILY	Hect, E3 ligase catalytic domain	514	865	IPR035983	GO:0004842
	Eupl02g00472	878	ProSiteProfiles	HECT domain profile.	538	878	IPR000569	GO:0004842
	Eupl02g00472	878	CDD	HECTc	517	876	IPR000569	GO:0004842
	Eupl02g00472	878	Gene3D	Hect, E3 ligase catalytic domains	518	744	-	-
	Eupl02g00472	878	SMART	ubq_7	87	159	IPR000626	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl02g00472	Eupl-Chr2	5444619	5456653	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl02g00472	87	161	Cytoplasmic Ribosomal Protein Gene Family	AT3G62250	38.667	1.10e-10	59.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl02g00472	-		-	tss:122640511	1317.37