Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00441 ATGGATCCGGTGTGTTTCGAGTCTATCGATCCGTCGGGGATGAGATCGGAGAATTTATTATCATCTGTTGGCGATAAGAGAGTTGCAGAGAGCGATGAGTGTGATGATTTGGGTGTGAAGAAAAAGGCGAGAGTTGATTCCAGTGAAGATATGAAGAGGGTTGCGGAAATTGTTCTGGTTTTGTCGGCCATGGGGAAGATGCGAGGTGGGAGGAGTCCGACGGATGTGGAGAAGGGGCTCATGACGGAAGCGAGGGAGAAGTTGGTGGAGATGTGTGAAGCAATGCCTCCGAAGGATATTATCCCGATGGATGCGGTTAGGGTTATTGTTGAGGATCTTGGGCTTAATAGGTCGAGGGATCAGAGGTTAGGGTTTCGGCCTCCAAAGATGTCGATTGCAGAGAAATTAATGCTCTCAAAGAGAAAGATGGAAGAATCCAAGAAATTTGCTGCACAATCTGCAACTTATTCATCACCACTGCTGCAAGTGGGCTTTGGGCCCAAGGCTGAAAGCCAGTCAGTGTTACATGCTGCTCATAGGTTTCCATCAGACAAATTAAATCCTACAGCCGTGTCTGCTGGAGGCTTTCAACCTGCTTCACCCATGGTCCATGTTTCTGCACAAACTTCAACACCCTTATCGAATCAGTTGCCTGTCAATGAAGTGCAATCAGCTACAGTTTCCAGGGGATTGATTAGCAGTCCTTCGGAAAGGGATTCATCTTCCTTAGCATTGCCTCGAATGGAAGCGGCACATTTCAGATTGGATGGAAGATTAAATGGGTCAGCTTATGCATCCCAAGTCCAAGCAAATTCTTCTGGTGATCACCTGCTGGAGAAAGCTCCAACCTGTTCACCACATCTCCAATCTGGAGTGGTAGCTAAAATTGGTCAAGCAAACAAGGTGCCTGATCATAATCCTATTAAGTTTGAGGGAACTCCTGAAATAAGTACCTCTCAAGTACATCTTCAAGTGACTAGAGAACAGAACTCTAAACCTTCTGTAATTCAAAATGCATATGGAAACCTGCAGAGTGTACATCAACCTTTGCAAGCCATGAACTTTGGGTCAACTTCTTCACTTTACACTAATCACAATGACATTGCTAGGAACGTTCAGAAGTTTTTGCAACCAAGGCGTCCTGAGCATCCTAACTGGACTCCTCCTTCAGTTGATTACATGAACAAGTCTTTAACTTGCCAAATATGCAGGGTTACCATCAATGATGTAGAAAGTTTACTTGTTTGTGACGCTTGTGAAAAAGGTCTCCACTTAAAATGCCTCCAGGCATACAATCAAAAGGGCATTCCTAAAGGCGAGTGGCACTGCCCTAAGTGCTTATTATCAAGCAATGGGAAGCCTTTGCCCCCTAAGTATGGTCGTGTTACGAGGAATATTAGTGCGCCAAAGGTGTCCCCCGTACGGGTGGAGTTCAGGTTTCTTCAGAGAAGAAGGCAGAAAATACAGATCAGAAGGTTAGCCATCAGAAGATAA 1494 0.4525 MDPVCFESIDPSGMRSENLLSSVGDKRVAESDECDDLGVKKKARVDSSEDMKRVAEIVLVLSAMGKMRGGRSPTDVEKGLMTEAREKLVEMCEAMPPKDIIPMDAVRVIVEDLGLNRSRDQRLGFRPPKMSIAEKLMLSKRKMEESKKFAAQSATYSSPLLQVGFGPKAESQSVLHAAHRFPSDKLNPTAVSAGGFQPASPMVHVSAQTSTPLSNQLPVNEVQSATVSRGLISSPSERDSSSLALPRMEAAHFRLDGRLNGSAYASQVQANSSGDHLLEKAPTCSPHLQSGVVAKIGQANKVPDHNPIKFEGTPEISTSQVHLQVTREQNSKPSVIQNAYGNLQSVHQPLQAMNFGSTSSLYTNHNDIARNVQKFLQPRRPEHPNWTPPSVDYMNKSLTCQICRVTINDVESLLVCDACEKGLHLKCLQAYNQKGIPKGEWHCPKCLLSSNGKPLPPKYGRVTRNISAPKVSPVRVEFRFLQRRRQKIQIRRLAIRR* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00441 497 SUPERFAMILY FYVE/PHD zinc finger 393 457 IPR011011 -
Eupl02g00441 497 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 22 477 - -
Eupl02g00441 497 Pfam PHD-finger 400 447 IPR019787 -
Eupl02g00441 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 454 IPR013083 -
Eupl02g00441 497 ProSitePatterns Zinc finger PHD-type signature. 400 446 IPR019786 -
Eupl02g00441 497 SMART PHD_3 399 447 IPR001965 -
Eupl02g00441 497 ProSiteProfiles Zinc finger PHD-type profile. 397 449 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00441 400 466 Core DNA Replication Machinery Family AT4G12620 34.247 7.21e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl02g00441 PHD 5.4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00441 - - nnu:104609484 636.336