Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00417 ATGCAAGGTCCCCAGGCCTACATGCCTCTTGTTCTTTCTCCTTCCCAAGGCATCATACCTGCACAGCAAGGCTGGAATACTTATACTGGAACTGTGAGCCATGCATCATCTACCAATGGATCGAATCTTGTCTACAACACTAAGCATCAGGGTGAATTGGGTTCGAATGGGCAGGTGCCATATTTACCGACATCTGTCCCACATTTCCCCGAGAGACCCGACCAGCCAGAATGTCAGTATTTCATGAAGACTGGTAGTTGCAAATTTGGACCCACTTGCAAGTACCATCATCCAAAAGAGAGGACTGCTTTTATGACCACAAATACTCTGGGCCCATATGGACTACCCCTGAGACCTGGTCAGGACATATGCACGTTCTACAGTCTCTATGGAATCTGCAAGTTTGGTTCAACTTGCAAATTCGATCACCCCTTGGTAGGATTCTATAACTATGGCATGAGCATGCCCACACTGTCCATCCCGGACCCATCTCTGTACCCTTACCAGAGAAACTCACCAATGACCCGCTCATCAGAAACTTCTCCCTCCAAATCATCAAGGCTGCATGATCTGACTGGGAAACCCGATGCAACAAGCACTAAACATCAGACCCCAGATATGAAAGTGCTCGAAGATACACCACAAGAAGCTATCTCTCCAACACACACTTCAACAACTTCTTTGGAACCCCCACACGACCAATCTGATTAA 711 0.4726 MQGPQAYMPLVLSPSQGIIPAQQGWNTYTGTVSHASSTNGSNLVYNTKHQGELGSNGQVPYLPTSVPHFPERPDQPECQYFMKTGSCKFGPTCKYHHPKERTAFMTTNTLGPYGLPLRPGQDICTFYSLYGICKFGSTCKFDHPLVGFYNYGMSMPTLSIPDPSLYPYQRNSPMTRSSETSPSKSSRLHDLTGKPDATSTKHQTPDMKVLEDTPQEAISPTHTSTTSLEPPHDQSD* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00417 236 Gene3D - 71 148 - -
Eupl02g00417 236 PANTHER PROTEIN PHOSPHATASE RELATED 3 177 - -
Eupl02g00417 236 ProSiteProfiles Zinc finger C3H1-type profile. 118 146 IPR000571 GO:0046872
Eupl02g00417 236 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 144 IPR000571 GO:0046872
Eupl02g00417 236 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 74 99 IPR000571 GO:0046872
Eupl02g00417 236 SUPERFAMILY CCCH zinc finger 116 144 IPR036855 GO:0046872
Eupl02g00417 236 SUPERFAMILY CCCH zinc finger 75 101 IPR036855 GO:0046872
Eupl02g00417 236 MobiDBLite consensus disorder prediction 216 236 - -
Eupl02g00417 236 SMART c3hfinal6 72 99 IPR000571 GO:0046872
Eupl02g00417 236 SMART c3hfinal6 118 145 IPR000571 GO:0046872
Eupl02g00417 236 ProSiteProfiles Zinc finger C3H1-type profile. 72 100 IPR000571 GO:0046872
Eupl02g00417 236 MobiDBLite consensus disorder prediction 164 236 - -
Eupl02g00417 236 MobiDBLite consensus disorder prediction 164 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00417 Eupl-Chr2 4813716 4821296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00417 2 220 C3H Transcription Factor Family AT1G04990 38.222 2.36e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl02g00417 zf-CCCH 8.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00417 - - nnu:104606509 359.762