Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00414 ATGGGGAAATCAGGTGGGAGAAGAAAGAAGGGTGGTGGTGGTGGTGGAAACCAGGTTACAGGAGATCTCCCAATCTCTGCTGCTAATGGTATGGTTGATTTGGATTCTTCAATCTTCTTGAAACGAGCCCATGAGCTCAAAGAGGAAGGAAACAAGCGTTTCCAGTCTAAAGACTATGCGGGTGCTCTCGAACAGTACGACCACGCTCTTCGCCTCACCCCCAAGACCCACCCTGACCGCGCTGTCTTTCACAGCAACCGTGCCGCTTGTTTGATGCAGACGAAGCCAGTGGACTACGAAACTGTCATCTCTGAGTGCTCTCTCGCACTTCAGGTTCAACCCCAGTTCAGCCGAGCCCTCCTCCGTCGTGCCCGGGCTTTCGAGTCTGTCGGTAAGTATGAAATGGCGATGCAGGATGTGCAAGCCCTATTGGCCGCTGATCCCAACCATCGAGAGGCTTTGGAGATTGCCCGCCGCTTGCGGGTTGCGCTTGGGGGTCGGCAAGAGGCTCAGCAGGACCTCCAGAGCCGCCCGTCACCGGCTGCACTTGGGGCGTCTGCTGTTCGCGGGGCACCAATTTCTGGGCTTGGCCCTTGCTTGCCCGCCCGGCCTGTACCTAAGAAAACGGCAGCATCAGTGACGGGGACGGTTGTGTTGCCCAATAACAAGTCTGAGAAAACCTCACATGTTCTTTCTACTGAAGATGGTATCGAGCTTAAAACCCAGCAACCTAAAGCTGTTTCGAATCCTTCCAAGCGTTCTTCTTTGGAACCCATTTCTCATCCGATTAAGAATAATTCAAAGGATCAATCTTTTTCCTCATCCTCGTCATTGCCTGTTCGCAGGCAGCCTTTGGACTCAGCTGCTACTCAATGGAGGCAGTTGAAGCTAGTTTACGATCACGACATCAGGCTTGCCCCGATGCCTGCCAATTGCAGTTTTAGAGTGTTGAGGGAGATTGTGAGCAAACGATTTCCGTCTTCTAAATCGGTTTTGATCAAGTATATGGATAATGATGGTGATTTGGTGACCATCACCTGTACTGGAGAACTCAGATTGGCAGAGTCATGTGTTGATAGCAGTGCACTGAAGGAGCCTGGAACAGAGAAAATTGGCTCTCTCAAGATGCTGAGGTTGCATATTGTTGAGGTTAACCCCGAGCAGGAGCCACCTTTGGTGGAAGAAGAGGAGGAGAAGCCGGTTGAGGAGGAGATCAAAGGTGATGACAGTGGGTCACATTCTTCTGCTGGAGAATCCATGCTGGAAGCTGTGGATACTGAGATCAGTAAGATTGAGGAAGAAACTCTGAAGGAGAAGGTTGGAGCTGGGGATGATACTGAATGCAAGGAAGTGGAGATTGATGATTGGCTATTTGAATTTGCTCAGCTGTTCCGGACTCATGTGGGGATTGACCCAGATGCCCATATCGATCTACACGAGCTTGGGATGGAGCTCTGTTCTGAGGCTCTTGAGGAGACAGTGACAAGCGATGAGGCTCAAAGTCTATTTGACATGGCTGCCTCCAAGTTCCAGGAGGTGGCTGCCTTGGCTTTCTTTAACTGGGGAAATGTTCACATGTGTGCCGCAAGGAAACGGATACCTCTTGAAGATTCTAAATCAAAGGAGGTGATGACAGCCCAACTTCAAGCAGCTTACAACTGGGTCTGGGAGAAGTATTCTCTGGCTGGAGAGAAGTACAAGGAGGCGCTCCGAATCAAGCCGGACTTTTATGAGGGGTTGCTTGCACTAGGGCAACAGCATTTTGAGACTGCAAAGCTTCAGTGGTCCTTCACACTTGCGAATAAGATTGACCTGGCAAGTTGGGATCCAGCGAAGACAATTAAGCTATTTGATAGCGCAGAAGAAAAGATGAAGGCTGCAACTGAGATGTGGGAGAAGCTGGAGGAGCAAAGGGCTAGTGAACTCAAAGATCCGAGTGCCAGCAAGAAGGAGGACTTGTTAAAAAGAAGGAAGAAACAGGGAGCAGTTACAGATGGTGGGTCCTCCGGAAGTGGTGGTCAGGGGGAGGTTTCAGCTGATGAAGCGGCGGAACAAGCGGCTGTGATGAGATCTCAGATACATCTGTTCTGGGGTAACATGCTTTTCGAGCGTTCCCAAGTTGAATTCAAACTGGGTTTGGATGGTTGGGAGAAGAATCTGGATGCTGCTGTTGAAAGGTTTAAGCTTGCCGGAGCTTCTGAAGCAGACATTTCTGCGGTTCTGAAGAACCATTCCTCTAATGTGGATGAGGTGGAAGTTGAGGAGAAAAATGTTACTAATCTAAGCACTGATGTTTCTGCTAACGCAAATGATAAGGATGAGGTTAAGCGCGTATTGGAAATGTGA 2346 0.4979 MGKSGGRRKKGGGGGGNQVTGDLPISAANGMVDLDSSIFLKRAHELKEEGNKRFQSKDYAGALEQYDHALRLTPKTHPDRAVFHSNRAACLMQTKPVDYETVISECSLALQVQPQFSRALLRRARAFESVGKYEMAMQDVQALLAADPNHREALEIARRLRVALGGRQEAQQDLQSRPSPAALGASAVRGAPISGLGPCLPARPVPKKTAASVTGTVVLPNNKSEKTSHVLSTEDGIELKTQQPKAVSNPSKRSSLEPISHPIKNNSKDQSFSSSSSLPVRRQPLDSAATQWRQLKLVYDHDIRLAPMPANCSFRVLREIVSKRFPSSKSVLIKYMDNDGDLVTITCTGELRLAESCVDSSALKEPGTEKIGSLKMLRLHIVEVNPEQEPPLVEEEEEKPVEEEIKGDDSGSHSSAGESMLEAVDTEISKIEEETLKEKVGAGDDTECKEVEIDDWLFEFAQLFRTHVGIDPDAHIDLHELGMELCSEALEETVTSDEAQSLFDMAASKFQEVAALAFFNWGNVHMCAARKRIPLEDSKSKEVMTAQLQAAYNWVWEKYSLAGEKYKEALRIKPDFYEGLLALGQQHFETAKLQWSFTLANKIDLASWDPAKTIKLFDSAEEKMKAATEMWEKLEEQRASELKDPSASKKEDLLKRRKKQGAVTDGGSSGSGGQGEVSADEAAEQAAVMRSQIHLFWGNMLFERSQVEFKLGLDGWEKNLDAAVERFKLAGASEADISAVLKNHSSNVDEVEVEEKNVTNLSTDVSANANDKDEVKRVLEM* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00414 781 ProSiteProfiles PB1 domain profile. 292 384 IPR000270 GO:0005515
Eupl02g00414 781 MobiDBLite consensus disorder prediction 636 662 - -
Eupl02g00414 781 MobiDBLite consensus disorder prediction 216 280 - -
Eupl02g00414 781 MobiDBLite consensus disorder prediction 234 280 - -
Eupl02g00414 781 MobiDBLite consensus disorder prediction 1 22 - -
Eupl02g00414 781 SMART PB1_new 292 384 IPR000270 GO:0005515
Eupl02g00414 781 Coils Coil 617 637 - -
Eupl02g00414 781 SUPERFAMILY TPR-like 468 594 IPR011990 GO:0005515
Eupl02g00414 781 SUPERFAMILY CAD & PB1 domains 291 363 - -
Eupl02g00414 781 SUPERFAMILY TPR-like 40 174 IPR011990 GO:0005515
Eupl02g00414 781 SMART tpr_5 81 116 IPR019734 GO:0005515
Eupl02g00414 781 SMART tpr_5 543 576 IPR019734 GO:0005515
Eupl02g00414 781 SMART tpr_5 117 150 IPR019734 GO:0005515
Eupl02g00414 781 SMART tpr_5 43 76 IPR019734 GO:0005515
Eupl02g00414 781 MobiDBLite consensus disorder prediction 636 683 - -
Eupl02g00414 781 CDD PB1 294 361 - -
Eupl02g00414 781 Gene3D Tetratricopeptide repeat domain 40 169 IPR011990 GO:0005515
Eupl02g00414 781 ProSiteProfiles TPR repeat profile. 43 76 IPR019734 GO:0005515
Eupl02g00414 781 MobiDBLite consensus disorder prediction 389 403 - -
Eupl02g00414 781 MobiDBLite consensus disorder prediction 386 420 - -
Eupl02g00414 781 Pfam PB1 domain 292 383 IPR000270 GO:0005515
Eupl02g00414 781 ProSiteProfiles TPR repeat profile. 117 150 IPR019734 GO:0005515
Eupl02g00414 781 Gene3D - 292 364 - -
Eupl02g00414 781 PANTHER PROTEIN CLMP1 1 762 IPR044517 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00414 Eupl-Chr2 4762912 4765257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00414 33 161 Calmodulin-binding Proteins AT3G25230 27.143 1.85e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00414 K26538 - nnu:104606505 1116.68