Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00411 ATGGACGGTGTGGAAAGAGGGAGGAGATGGAGGAATCTGAAAGAACGATTGGGATTAAAGGGGATTGGATGTTGTGGGGCCACCTGGGGTTTCGGGGCTTCTTCCAACATGAGTGTTATAGAAGAAGAAGAAGAAGAAGACGAGCAAGCCTTACAAGAAGAGACAATGGGTGAGGATCAGATTACAGAGGAGAACAATCTGGATCAAGCTTGTGTGGGTCAGATACCGGTAACGGCGTCAGGGATGAACTTGGCGACGGCGTTGGCTGCTGAGCGTCATTTCCGGGCGGCGCAGGATTGGGATGGTGGCAGTGTCAGCCCCAACGAAGTCACCACATCTGCAAGTGCAGGGACTGCTCCTGGTACGCCGTTGAGGGTATCGTTGATGAGATTACTTGAAGAAGGGGACGGTGTTGATGGAGAGAGGGAGACAGAGAAAGGAGAAGGAGGAGAAGGGGGAGGGAGTGATGGGATGTGCTGCGTGTGCATGGGAAGAAGGAAAGGTGCGGCTTTCATCCCATGTGGGCACACATTTTGCAGAGTGTGTTCGAGGGAGGTGTGGTTGAATCGAGGGTCTTGTCCCCTTTGCAACCGTTCTATTCTCGAGATTCTTGACATCTTCTAG 624 0.524 MDGVERGRRWRNLKERLGLKGIGCCGATWGFGASSNMSVIEEEEEEDEQALQEETMGEDQITEENNLDQACVGQIPVTASGMNLATALAAERHFRAAQDWDGGSVSPNEVTTSASAGTAPGTPLRVSLMRLLEEGDGVDGERETEKGEGGEGGGSDGMCCVCMGRRKGAAFIPCGHTFCRVCSREVWLNRGSCPLCNRSILEILDIF* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00411 207 MobiDBLite consensus disorder prediction 134 153 - -
Eupl02g00411 207 ProSiteProfiles Zinc finger RING-type profile. 159 197 IPR001841 -
Eupl02g00411 207 SUPERFAMILY RING/U-box 158 204 - -
Eupl02g00411 207 Pfam Zinc finger, C3HC4 type (RING finger) 156 201 - -
Eupl02g00411 207 MobiDBLite consensus disorder prediction 134 150 - -
Eupl02g00411 207 PANTHER OS01G0917900 PROTEIN 6 207 - -
Eupl02g00411 207 MobiDBLite consensus disorder prediction 104 120 - -
Eupl02g00411 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 206 IPR013083 -
Eupl02g00411 207 MobiDBLite consensus disorder prediction 99 122 - -
Eupl02g00411 207 CDD RING-HC 159 196 - -
Eupl02g00411 207 SMART ring_2 159 196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00411 Eupl-Chr2 4734326 4735643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00411 1 207 C3H Transcription Factor Family AT4G22250 47.887 2.29e-53 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00411 - - nnu:104606503 248.44