Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00400 ATGGAGGGTGGTCCGAGTAGTAATTCTTGTTTGATGGGTTTTGGACATAACAGTAATGGTCTTTCTTCTATGATGATGATGCCTCTCATGACTTCTCCTCCTAACGCAGGAGCAAATAATACCCTATTTCTTCCTCTTCCTTCCAACAACAATCACAACCACAACCGTAACAGCAGTAGTGGCTCTTCTCTGATTCTTGACGACAACAATATCAACAGCAACAACAACAACAACAACAGCAACACAGGTTGTTATTTCATGGAGAACAATAATAGCAACAACGACAGCAACAGTTGCTCTATCAGGGCTAAGATCATGGCTCATCCTCACTACCCACGTCTCTTGGCTGCCTATGTCAACTGTCAAAAGGTTGGAGCACCTCCTGAAGTAGTTGCAAGGTTAGAGGAGGCTTGCGCATCTGAGGAGGCTATGGGCCGAACAGGCACAGGCTGCATCGGCGAAGACCCAGCGCTCGATCAGTTCATGGAGGCCTACTGCGAGATGCTCACAAAGTACGAGCAAGAGCTCACAAAACCCTTTAAAGAAGCCATGCTCTTTCTCTCTAGGATCGAGTGCCAGTTCAAAGCCCTTACTGTTGCTTCTTCAGATTCTGATCACATGTCATCAGCTTGTGGTGACGCTGTAGAACGGAATGGATCATCTGAGGAAGAGATTGATGCAAGCAACAACTACATAGATCCTCAAGCAGAAGACGGAGAATTAAAAGGCCAGCTTTTGCGCAAGTACAGTGGGTATTTGGGCAGCCTCAAGCAGGAATTTCTAAAGAAGAGAAAGAAAGGGAAACTGCCCAAGGAAGCCAGGCAGCAGTTGCTGGACTGGTGGAGCAGACACTACAAATGGCCTTACCCATCGGAATCACAGAAGCTGGCGCTTGCGGAGTCGACAGGTTTGGATCAGAAACAGATAAACAACTGGTTCATTAACCAAAGGAAGCGCCACTGGAAGCCTTCAGAAGAAATGCAGTTTGTGGTGATGGACGCAGCACACCAACACTACTACATGGACAATGTTATGGGGAACCCCTTTCCTATGGATTGCGCGCCCACACTGCTTTGA 1077 0.4735 MEGGPSSNSCLMGFGHNSNGLSSMMMMPLMTSPPNAGANNTLFLPLPSNNNHNHNRNSSSGSSLILDDNNINSNNNNNNSNTGCYFMENNNSNNDSNSCSIRAKIMAHPHYPRLLAAYVNCQKVGAPPEVVARLEEACASEEAMGRTGTGCIGEDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFLSRIECQFKALTVASSDSDHMSSACGDAVERNGSSEEEIDASNNYIDPQAEDGELKGQLLRKYSGYLGSLKQEFLKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEEMQFVVMDAAHQHYYMDNVMGNPFPMDCAPTLL* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00400 358 SMART HOX_1 262 327 IPR001356 GO:0003677
Eupl02g00400 358 Pfam Homeobox KN domain 280 319 IPR008422 GO:0003677|GO:0006355
Eupl02g00400 358 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 63 330 - -
Eupl02g00400 358 Gene3D - 258 330 - -
Eupl02g00400 358 FunFam Homeobox protein knotted-1-like 2 265 327 - -
Eupl02g00400 358 SMART ELK_2 240 261 IPR005539 GO:0003677
Eupl02g00400 358 Pfam ELK domain 240 261 IPR005539 GO:0003677
Eupl02g00400 358 ProSitePatterns 'Homeobox' domain signature. 298 321 IPR017970 GO:0000981|GO:0006355
Eupl02g00400 358 CDD homeodomain 272 324 IPR001356 GO:0003677
Eupl02g00400 358 ProSiteProfiles 'Homeobox' domain profile. 260 323 IPR001356 GO:0003677
Eupl02g00400 358 ProSiteProfiles ELK domain profile. 240 260 IPR005539 GO:0003677
Eupl02g00400 358 SMART KNOX2_2 148 199 IPR005541 GO:0003677|GO:0005634
Eupl02g00400 358 Pfam KNOX2 domain 151 198 IPR005541 GO:0003677|GO:0005634
Eupl02g00400 358 MobiDBLite consensus disorder prediction 45 65 - -
Eupl02g00400 358 Pfam KNOX1 domain 101 140 IPR005540 GO:0003677|GO:0005634
Eupl02g00400 358 SMART KNOX1_2 99 143 IPR005540 GO:0003677|GO:0005634
Eupl02g00400 358 SUPERFAMILY Homeodomain-like 262 335 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00400 Eupl-Chr2 4595734 4604640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00400 101 352 Homeobox Transcription Factor Family AT1G62360 78.824 6.84e-134 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Eupl02g00400 KNOX2 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00400 - - nnu:104588046 553.903