Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00396 ATGTTCCTTGTGAAGAGGTTAGCTCATTATCCAACTCTACGCCTGCGTTGCTATTGTACACCGCCATCCTCCTCTCCCTCTTCCCCCACTAACAAACTATTTGTGGGAGGTCTCTCATGGGCAGTAGACGAGAAGTCTTTGAAGGACGCCTTCTCTTCTTTTGGAGAGGTCACCGAAGTGAGGATCATGTATGACAAAGACACCGGGAGGTCAAGAGGCTTTGGGTTTGTTTATTTTTCGAAAGACGATGGTGCCAGATCCGCAAAAGATGCTATGGATGGAAAGGCATTGTTAGGTCGGCCGTTGAGGATAAGCTTTGCACTTGAAAAGGTTCGTGGTGGGCCTGTAGTAGTTCCTCGCCTTTCTAATGTAAGAGACATCACTACTCGAAATAATTGA 399 0.4687 MFLVKRLAHYPTLRLRCYCTPPSSSPSSPTNKLFVGGLSWAVDEKSLKDAFSSFGEVTEVRIMYDKDTGRSRGFGFVYFSKDDGARSAKDAMDGKALLGRPLRISFALEKVRGGPVVVPRLSNVRDITTRNN* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00396 132 Gene3D - 19 112 IPR012677 -
Eupl02g00396 132 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Eupl02g00396 132 SUPERFAMILY RNA-binding domain, RBD 20 114 IPR035979 GO:0003676
Eupl02g00396 132 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 23 110 - -
Eupl02g00396 132 CDD RRM2_NsCP33_like 32 107 - -
Eupl02g00396 132 SMART rrm1_1 32 105 IPR000504 GO:0003723
Eupl02g00396 132 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 103 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00396 Eupl-Chr2 4552498 4554769 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00396 33 88 C2H2 Transcription Factor Family AT2G19380 48.214 5.22e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00396 - - cave:132182736 197.978