Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00374 ATGCTCTCCCTAACCTCTCTCCTGCTGTTCTCATGTCTACTAGCATGTTGGGCTTCAATCCTGCAAGCTTACTCACTAGAAAACACGTACAGCACCATATCAAGTTATCAACAAAAGAAACTCATGAACAAAATCGACAGTTGTTGGCGCTCGAATCCGAACTGGGCGTCTAATCGTCGTGCCTTAGCCGACTGTGCGGTAGGCTTTGGTAAGGCAGCAATGGGAGGGAAATATGGAGCCACATACATAGTCACAAACCCATCTGATGATCCCACCAACCCAAAGCCCGGCACACTCCGATACGGTGTCATCCAAACGAAGCCTCTGTGGATAACTTTCGCAAGGGACATGGTCATTAGGCTAAAGAATGAGCTTATAATGAACAGTTTCAAGACCATAGATGGGCGAGGGGTCAAGGTGGAAATAGCATATGGGCCTTGCATCACAGTGCAAGATGTGAGCCATATCATAATACATGGGATCAGCATTCATGATTGTAAGCCTGGGAAAAGTGGCCTTGTTCGCAGCACGCCAATGCACGTTGGCCGTCGGGGTGGCTCCGATGGGGATGCCATTGCTATATTTGCATCTTCGCACATCTGGATTGACCATTGCTTTCTATCTCGTAGCAGTGACGGTCTCATCGATGTTATCCATGCTTCAACGGCGGTCACCATCTCGAACAACTTCTTCTCCCAACATGATAAAGTAATGTTGTTTGGACACAACGATAAATTTACAGCGGACAAAGTTATGCGAGTTACGGTTGTGTTCAACCGTTTTGGTCCTGGTTTAGTGCAAAGGATGCCCAGGGTTAGGTTTGGATACACGCATGTCGCAAACAATAGGTACGACGAGTGGCAGATGTATGCCATTGGTGGGAGCGCCAATCCCACGATATTTAGCGAAGGGAACTTCTTTACCGCCCCCAAAAATCCCAACATTAAACAGGTCACTAAACGAGAGAGTGGTGGGTGGAAGAATTGGAAATGGAGGTCTTCAAAGGATAAATTTGAAAATGGAGCTTACTTTGTTCAGTCTGGATGGGGAAGCTGCGCTCCTCTTTATACCAAGTCTCAGTCATTCAGTGTTGCCCAAGGATCAATGGTTCCCGCTCTAACATCAGATGCCGGCCCTCTGCAATGCGTTGCTAGAAAAAAATGTTAA 1167 0.4704 MLSLTSLLLFSCLLACWASILQAYSLENTYSTISSYQQKKLMNKIDSCWRSNPNWASNRRALADCAVGFGKAAMGGKYGATYIVTNPSDDPTNPKPGTLRYGVIQTKPLWITFARDMVIRLKNELIMNSFKTIDGRGVKVEIAYGPCITVQDVSHIIIHGISIHDCKPGKSGLVRSTPMHVGRRGGSDGDAIAIFASSHIWIDHCFLSRSSDGLIDVIHASTAVTISNNFFSQHDKVMLFGHNDKFTADKVMRVTVVFNRFGPGLVQRMPRVRFGYTHVANNRYDEWQMYAIGGSANPTIFSEGNFFTAPKNPNIKQVTKRESGGWKNWKWRSSKDKFENGAYFVQSGWGSCAPLYTKSQSFSVAQGSMVPALTSDAGPLQCVARKKC* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00374 388 SMART amb_all 116 313 IPR002022 -
Eupl02g00374 388 Pfam Pectate lyase 128 307 IPR002022 -
Eupl02g00374 388 Gene3D - 42 381 IPR012334 -
Eupl02g00374 388 PANTHER PECTATE LYASE 18-RELATED 27 386 IPR045032 GO:0030570
Eupl02g00374 388 PRINTS Pollen allergen Amb family signature 188 209 IPR018082 -
Eupl02g00374 388 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Eupl02g00374 388 PRINTS Pollen allergen Amb family signature 124 140 IPR018082 -
Eupl02g00374 388 PRINTS Pollen allergen Amb family signature 65 82 IPR018082 -
Eupl02g00374 388 PRINTS Pollen allergen Amb family signature 268 287 IPR018082 -
Eupl02g00374 388 PRINTS Pollen allergen Amb family signature 290 309 IPR018082 -
Eupl02g00374 388 PRINTS Pollen allergen Amb family signature 329 353 IPR018082 -
Eupl02g00374 388 PRINTS Pollen allergen Amb family signature 359 382 IPR018082 -
Eupl02g00374 388 SUPERFAMILY Pectin lyase-like 42 379 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00374 Eupl-Chr2 4208947 4211080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00374 7 388 Polysaccharide Lyase AT1G11920 70.833 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00374 K01728 - vvi:100245293 629.402