Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00362 ATGTCGGATTCCGATTCCAGCGGCAGTGATGAAGGTGGTGATTCTGTGCGAGAGGAGATTAGTGAGTCAGATTCTCTGAATACGTTATATATGATGCAAGTGGGATGGTCCAGTTGCAAGAAAGAGAAACCGAAAGGTAAGGATGAACAGCAAAGCAATAAAGAAGAACCTGGAATCCGTATTGATGTTCTTGAAGAAGCTGGTGTTTATCCTTTGCCTAGTCCCAATAAGAAGAATACGAGGAAAAGAAGAAGATCTAGGCCTATATTGCTGTGGGAAGTTTTGCAGGAAGAGATTGAGAGATGGATAGGTGCCAATGAAGCAAAAGATTTTGATTTAGATTTTAAGGATGAACAAGTGTCGGAAATTGCCGAGCCCCCCCCAGAATTGCTCATGCCTCTACTTAGATACCAAAAGGAATGGCTGGCTTGGGCTTTGAAGCAGGAGGAATCTGTGAATAGAGGGGGAATCCTTGCAGACGAAATGGGGATGGGGAAAACTATCCAAGCCATTGCACTCGTTCTTGCCAAACGGGCGATCACTCAAACAGGTTGTGGGTCCAGTAGGCACTCATGGTCATCCAATTCATCAGAGGGGCTGCTGGAGATTAAATGCACTCTCGTTATTTGCCCCGTGTCTGCTGTGAGTCAATGGAAAAATGAGATTGATCGGTTCACGCAAGAAGGGAGCACAAGGGTGCTGGTCTATTATGGGGCTAACAGAAGGAAGAGTCTCAATCAGTTCTCTGAATACGATATTGTCTTGACTACATACTCCACTGTCGAGGTGGATTACAGGAAGAATGTGATGCTACCCAAGGAGAAGTGTGTTTGGTGCGGGAAATTCAATTGTTCCAAGAATTTGGTTACCCACCTGCTAGATTTCTGTGGGCACATGCAAGGAAGTAAGGAGGGGAATCATGGATTGGAATCTTCCAACCCGAAAACAAAATCTTCTGTTCATGAATATGAGACCAGCAATTTTGAAGATGGTAAAGTTAAGGGAACTGGCAAGAAGTCTAACAAGCGAGAAAAGGAACTAGTGATTAGTTCTTCCAAGGGGAGTCCAGCAGGTGACGACCAAGGCTCACCTTTGCATTCTGTAAAATGGGACCGCATTATTTTGGACGAGGCTCATTTAATAAAAGCTAGACACAGTAATACTGCAAAGGCTGTTCTTGCTTTACAATCTTCATATAAATGGGGTTTAAGTGGCACTCCACTACAGAATCATGTTGGAGAACTTTATTCACTGGTCCGTTTCCTGCAAATAACCCCTTATTCATATTACTTCTGTAGGGATTGTGATTGCACCTTACTTGATTACACTAAAACGGAGTGTCTGAATTGCGTTCATGCACCCTCGAGGCATTTTTGCTGGTGGAACAAATATGTGGGTGGACCAATACAATATTCAGGGAATGCTGACAAGAAAAAAAGAGCCTCGATTTTGCTAAAACACAAAGTTTTGAAAAACATAGTGCTAAGGCGCACTAAGAAAGGCAGGGTTGCAGATCTTGCCCTTCCACCAAGAATTGTAACCTTGAGGCGGGATACCCTGGATATTAACGAAGAAGATTATTATGAAACATTGTATAAGAAAAGTCAGTTACAATTTAATACATATGTTGACACCGGAACCTTAATGAATCATTACGCTAACGTATTTGGCCTCCTTGCACAATTACGGAAGGCGGTAAATCATCCATACCTTGTGATATATTCTAATACTGCATCAATAAAGATAAGAAGCATTGATAACAATGATGAACAAGAGTGTGGTATTTGTAATGGTCAAACAAAAGATTTAGTGGTCACCTCTTGCAAGCATGTTTTCTGTGAGGCTTGTTTGATAGACTATGTTGCAGAAATGGGACAGGACTCGTGCCCCTCATGTTCAAAACCACTAACTGCTGACTTCACAACAAAGATGAATTCAGGGGATCAAGGCACTACGGAAAACATCAAGGGTTTTAGATGTTCAAGTATTATAAACAAAATTAGTAATGATGATTTTAAGACAAGCACAAAAATTGATGCTTTGAGGGAAGAAATCAGATTCATGATTGAAAGGGATGGTTCTGCAAAAGGACTTGTTTTTAGCCAGTTCCTTAATTTCTTGGATTTGATACATTACTCCCTCCAGAAGTCTGGCATACATTGTGTTCAATTAGTTGGGAGTATGACAATGGCCGCAAGAGATGTTGCAGTAAGGACATTCACTGATGATCCGGATTGCAAAGTCTTCCTTATGAGCTTGAAAGCTGGAGGTGTTGCCCTCAATCTCACAGTTGCATCACATGTTTTCTTGATGGACCCCTGGTGGAACCCAGCTGTGGAGCGGCAAGCCCAAGATCGTGTTCACCGAATGGGACAGTATAAACCAATCAGAATTGTGAGATTCATTATTGAGAATACGATTGAGGAAAGGATTCTAAAGCTGCAAGAGAGGAAGGATAAAATGTTTGAAGCGACTGTAGGTGGTGCTTCTGACGCTGTGGTGCTAAAACTAACGGAGGCTGACTTCAGATACTTGTTTGCCGCCAGAGCATGA 2553 0.4222 MSDSDSSGSDEGGDSVREEISESDSLNTLYMMQVGWSSCKKEKPKGKDEQQSNKEEPGIRIDVLEEAGVYPLPSPNKKNTRKRRRSRPILLWEVLQEEIERWIGANEAKDFDLDFKDEQVSEIAEPPPELLMPLLRYQKEWLAWALKQEESVNRGGILADEMGMGKTIQAIALVLAKRAITQTGCGSSRHSWSSNSSEGLLEIKCTLVICPVSAVSQWKNEIDRFTQEGSTRVLVYYGANRRKSLNQFSEYDIVLTTYSTVEVDYRKNVMLPKEKCVWCGKFNCSKNLVTHLLDFCGHMQGSKEGNHGLESSNPKTKSSVHEYETSNFEDGKVKGTGKKSNKREKELVISSSKGSPAGDDQGSPLHSVKWDRIILDEAHLIKARHSNTAKAVLALQSSYKWGLSGTPLQNHVGELYSLVRFLQITPYSYYFCRDCDCTLLDYTKTECLNCVHAPSRHFCWWNKYVGGPIQYSGNADKKKRASILLKHKVLKNIVLRRTKKGRVADLALPPRIVTLRRDTLDINEEDYYETLYKKSQLQFNTYVDTGTLMNHYANVFGLLAQLRKAVNHPYLVIYSNTASIKIRSIDNNDEQECGICNGQTKDLVVTSCKHVFCEACLIDYVAEMGQDSCPSCSKPLTADFTTKMNSGDQGTTENIKGFRCSSIINKISNDDFKTSTKIDALREEIRFMIERDGSAKGLVFSQFLNFLDLIHYSLQKSGIHCVQLVGSMTMAARDVAVRTFTDDPDCKVFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRVHRMGQYKPIRIVRFIIENTIEERILKLQERKDKMFEATVGGASDAVVLKLTEADFRYLFAARA* 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00362 850 ProSiteProfiles Zinc finger RING-type profile. 593 633 IPR001841 -
Eupl02g00362 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 497 IPR027417 -
Eupl02g00362 850 CDD SF2_C_SNF 675 802 - -
Eupl02g00362 850 Gene3D - 106 287 IPR038718 -
Eupl02g00362 850 SMART ring_2 593 632 IPR001841 -
Eupl02g00362 850 CDD DEXDc_SHPRH-like 136 497 - -
Eupl02g00362 850 MobiDBLite consensus disorder prediction 40 60 - -
Eupl02g00362 850 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 38 847 - -
Eupl02g00362 850 Pfam SNF2-related domain 149 572 IPR000330 GO:0005524|GO:0140658
Eupl02g00362 850 MobiDBLite consensus disorder prediction 322 349 - -
Eupl02g00362 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 846 IPR027417 -
Eupl02g00362 850 Gene3D - 299 511 IPR038718 -
Eupl02g00362 850 Pfam Helicase conserved C-terminal domain 678 791 IPR001650 -
Eupl02g00362 850 MobiDBLite consensus disorder prediction 304 364 - -
Eupl02g00362 850 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 147 425 IPR014001 -
Eupl02g00362 850 Gene3D - 512 848 IPR027417 -
Eupl02g00362 850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 593 647 IPR013083 -
Eupl02g00362 850 ProSitePatterns Zinc finger RING-type signature. 608 617 IPR017907 -
Eupl02g00362 850 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 673 841 IPR001650 -
Eupl02g00362 850 MobiDBLite consensus disorder prediction 305 321 - -
Eupl02g00362 850 MobiDBLite consensus disorder prediction 1 60 - -
Eupl02g00362 850 SUPERFAMILY RING/U-box 576 639 - -
Eupl02g00362 850 SMART helicmild6 708 791 IPR001650 -
Eupl02g00362 850 SMART ultradead3 130 431 IPR014001 -
Eupl02g00362 850 Pfam Zinc finger, C3HC4 type (RING finger) 590 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00362 Eupl-Chr2 4039496 4050439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00362 68 846 RAD5 or RAD16-like Gene Family AT1G05120 59.207 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl02g00362 SNF2_N 3.6e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00362 K15083 - nnu:104588307 1042.72