Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00324 ATGGATTTGGTTTCTTCTTCTAAGAGTTTAGAAGAGACGAGTGATCTCCATAAAGAGGATTGCTCTACTTTTGTTGGAAAGTTGGACCTTAATCTTGCAGCAAGTAAAGAAGACGGTGAAGGTTATGGTCATAAAAAAGAAGCATGGGTTGATGGAATTCAAGTGAATTTGAATCAGAAGGAGCACCACGGGTCCCCTTCGTTGCATGTTGATGTCAAGTGTGAGAGGCTTGAATCTCCTTATACCAAATCCAGTTCTCCGGTGCAAACTGAATTAGATCATGATGAGTTGGGGAGAATAAATTGTGATGATAATAAAGAGGGGTCGCAATCTCACCACGGAAAAACTGAAGTGGTAAGTGGCGGATTTTATGATAAATCATCCTCCCCAATTAAGGCAGAAACATTCCACAATGAAATGGAAACTGGAGATTTTGCTCATTACTCATGGAAGTCTCCTTTGACAATGGATTCCAATTACCAACAAGAAGATTTGGAGGACAATTCTCTTCACCATGATGAAAAATTGAAGGAAAATTCTGGGAATTTTTCAGGAAACTTGCAATATCAGAAGACTGAATCTGCCTATGAGGAAATGGAAGATGGAGGTACTGAGCTGCATGCGGGAAAATCCTTGTCTCCTGTGAGGACACGATACAATGGTAATGAAACTAAGAAGGAAGACTTTTACTATGCAGGGAAGTCACCATCTGAGAATGGAAAACAAGAGGGGAGGAATTCTGATCTGCACTATCCCAGGAGAAACCCCAAAAGATCAGCATCACCAATGGGACATATGTCCGTCTCTCCTGAAAGGTCTCCTGACATACAATCATCTGCAGGCCAAAAGCCACCTTCATCACCACATGGTGTTCAAGACTCATTATACTCCCGTAGATCGTCTAGACATAAGCATTCATCTTCTCCTGAAAGGACTGGTGGGGATAGTAAAAGAGTTCTCTCCCAAGACCATTTATCTCCTTCTGCAAGACGGACCTCTACTTCTCCACGGAGACGGTCTCGACAAGATTATCCACGCAGGGATGATTCTCTTGGAAAGCAACTATCTAGATCACCAAGAAGGCACCATTCATCACCAGATCATCGAAGACAGGACAAGTCAGTGTCGCGATCACCCACCAGGCAGAGGGATTCTTCTTCAGGATATAGACAGAAACCTTCATCTTCTCCTGGAAGGACTGGTGGGGATAGTAAAAGAGTTCTCTCCCAAGACCATTTATCTCCTTCTGCAAAACGGACCTCTACTTCTCCTTGGAGGCGGTCTCGACAAGATTCTCCACGCAGGGATGATTCTCCTGGAAAGCGACTATCTAGATCACCAAGAAGGCACCATTCACCACCAGATCGTCGAAGACGGAACAAGTCTGTGTCGCGATCACCCACCAGGCAGAGGGATTCTTCTTCAGGATATAGACAGAAACGTTCATCTTCTCTTGAAAGGACTGGTGGGGATAGTAAAAGAGTTCTCTCCCAGGACCATTTATCTCCTTCTGCAAGACAGACCTCTACTTCTCCTGGAAAGCGACTATCTAGATCACCAAGAAGGCACCATTCACCACCAAATCGTCGAAGACAGGACAAGTCAGCGTCACGATCACCAACTAGGCAGAGGGATTCTTCTTCAGGATATAGAAGAGACTATCGTGATAGATCTCGATCAAGGTCTCCATATGCAAGAGATCGTTACATAAGATCCCCAAGGAGGAGGTATTCCCCAAGGCGCAGGTCTCCTCCTTCTGGGTATCATTCTCATCGTGGCTCTACTAGAAGGAGACCTTGGTCCCCACCTCCTAACCGGAGCACTGGAGTAGGTAGACCTGGAAACAATTTATTTGTTGCAGGCTTTAGCTTTGTTACTACAGAAAGAGATCTGCAAAGGAAGTTTTCAAGGTTCGGCCGCGTGACGGATGTTCGCATAGTTCGAGACAAGAGGTCAGGGGATTCACGTGGTTTTGGCTTTTTATCATTGGAAAGAGATGAAGATGCAGATGCAGCGATCCGAGCTCTTGACCAGACTGAATGGAATGGCCGGGTTGTCCTGGTGGAGAAATCAAAAACGCCTGCCCGCTGA 2091 0.4538 MDLVSSSKSLEETSDLHKEDCSTFVGKLDLNLAASKEDGEGYGHKKEAWVDGIQVNLNQKEHHGSPSLHVDVKCERLESPYTKSSSPVQTELDHDELGRINCDDNKEGSQSHHGKTEVVSGGFYDKSSSPIKAETFHNEMETGDFAHYSWKSPLTMDSNYQQEDLEDNSLHHDEKLKENSGNFSGNLQYQKTESAYEEMEDGGTELHAGKSLSPVRTRYNGNETKKEDFYYAGKSPSENGKQEGRNSDLHYPRRNPKRSASPMGHMSVSPERSPDIQSSAGQKPPSSPHGVQDSLYSRRSSRHKHSSSPERTGGDSKRVLSQDHLSPSARRTSTSPRRRSRQDYPRRDDSLGKQLSRSPRRHHSSPDHRRQDKSVSRSPTRQRDSSSGYRQKPSSSPGRTGGDSKRVLSQDHLSPSAKRTSTSPWRRSRQDSPRRDDSPGKRLSRSPRRHHSPPDRRRRNKSVSRSPTRQRDSSSGYRQKRSSSLERTGGDSKRVLSQDHLSPSARQTSTSPGKRLSRSPRRHHSPPNRRRQDKSASRSPTRQRDSSSGYRRDYRDRSRSRSPYARDRYIRSPRRRYSPRRRSPPSGYHSHRGSTRRRPWSPPPNRSTGVGRPGNNLFVAGFSFVTTERDLQRKFSRFGRVTDVRIVRDKRSGDSRGFGFLSLERDEDADAAIRALDQTEWNGRVVLVEKSKTPAR* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00324 696 MobiDBLite consensus disorder prediction 467 483 - -
Eupl02g00324 696 MobiDBLite consensus disorder prediction 271 295 - -
Eupl02g00324 696 MobiDBLite consensus disorder prediction 319 333 - -
Eupl02g00324 696 MobiDBLite consensus disorder prediction 530 572 - -
Eupl02g00324 696 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 615 693 IPR000504 GO:0003723
Eupl02g00324 696 SMART rrm1_1 616 689 IPR000504 GO:0003723
Eupl02g00324 696 MobiDBLite consensus disorder prediction 98 124 - -
Eupl02g00324 696 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 617 686 IPR000504 GO:0003723
Eupl02g00324 696 MobiDBLite consensus disorder prediction 241 255 - -
Eupl02g00324 696 MobiDBLite consensus disorder prediction 424 443 - -
Eupl02g00324 696 FunFam Serine/arginine-rich splicing factor SR45a 529 695 - -
Eupl02g00324 696 MobiDBLite consensus disorder prediction 573 596 - -
Eupl02g00324 696 Gene3D - 591 696 IPR012677 -
Eupl02g00324 696 MobiDBLite consensus disorder prediction 380 423 - -
Eupl02g00324 696 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 569 694 - -
Eupl02g00324 696 MobiDBLite consensus disorder prediction 336 356 - -
Eupl02g00324 696 MobiDBLite consensus disorder prediction 495 515 - -
Eupl02g00324 696 MobiDBLite consensus disorder prediction 98 113 - -
Eupl02g00324 696 MobiDBLite consensus disorder prediction 444 464 - -
Eupl02g00324 696 MobiDBLite consensus disorder prediction 193 614 - -
Eupl02g00324 696 SUPERFAMILY RNA-binding domain, RBD 594 694 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00324 Eupl-Chr2 3717765 3722780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00324 616 684 Eukaryotic Initiation Factors Gene Family AT2G36660 28.986 8.27e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00324 - - ming:122093789 268.085