Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00310 ATGATGCAACCAGCAACAGGCGTCGTTCCTCAGATGGATCAACATCACCAGCAACCACCACCGCAACAGCAGTGGATGATGATGCAGCCTCAACAGCCTCAGGCCCCACCCATGTGGAACCAGCAGCCACAACAAGCGCCGCAGCAACAAGTACCGGCTCAGCAATCTCAGCCCCAACCGCAGCAGCACCAGTACTCCACTGCACAGCCGACTAGTGCTGACGAGATCCGAACGCTTTGGATCGGGGACTTGCAGTACTGGATGGAGGAGAGCTATATCCACAGCTGTTTCGCTCACACAGGCGAGGTTTCTTCAGTGAAAGTTATCCGCAATAAACAAACTGGCCAATCGGATGGTTATGGATTTATCGAGTTTGTTAATCGTGCTGCTGCAGAAAGAACTTTGCAGACATACAATGGCACACTCATGCCGAATGTTGAGCAAAATTTCCGATTGAACTGGGCTTCTTTTGGTGTGGGCGAGAAGCGTCCTGATGATAGTGCGGACTTTACAATTTTTGTTGGAGATTTGGCTTCTGATGTTACAGATTACACGCTACAAGAGACTTTCAGGAGTCATTATCCCTCTATCAAGGGCGCGAAGGTTGTCACTGATAGAACCACTGGGCGCTCGAAGGGCTATGGGTTTGTTAGGTTTGGAGATGAAAGTGAGCAACTGCGTGCTATGGCTGAAATGAACGGAATGTTTTGTTCGACGAGGCCTATGCGTATTGGCCCAGCTACTACCAAAAAGAACGTGGGTGCTCAGCAACAATATCCGAAAGCATCCTACCAGAATACTCAAGGGACTCAGAATGAGAATGATCCAAATAATACTACTATATTTGTTGGTGGTTTGGATTCAAATGTCACCGATGACCATTTGAGACAAGTTTTTAGTCAATTTGGTGAATTGGTCCATGTGAAAATACCAGTCGGAAAACGATGTGGGTTTGTTCAATTTGCCAACAGAGCTTGTGCGGAGGAGGCTTTACTGATGTTGAATGGAACTCAATTGGGGGGGCAGAACATTCGACTTTCATGGGGGCGTAGTCCTTCGAACAAACAGGATGCATCTGCTGGAGTGGTTCAGCCACAGCCAGATCCAAACCAGTGGAATGGTGGATACTATGGATACAATCAAGGTTATGAAGCTTATGGATATGCTCCTCCTCCACAAGATCCTAACATGTATGCTTATGGAGCGTATCCTGCATATGGGAATTATCAGCAACAACAGGTACGCGCCTCCTGCATCTGCTAA 1263 0.4766 MMQPATGVVPQMDQHHQQPPPQQQWMMMQPQQPQAPPMWNQQPQQAPQQQVPAQQSQPQPQQHQYSTAQPTSADEIRTLWIGDLQYWMEESYIHSCFAHTGEVSSVKVIRNKQTGQSDGYGFIEFVNRAAAERTLQTYNGTLMPNVEQNFRLNWASFGVGEKRPDDSADFTIFVGDLASDVTDYTLQETFRSHYPSIKGAKVVTDRTTGRSKGYGFVRFGDESEQLRAMAEMNGMFCSTRPMRIGPATTKKNVGAQQQYPKASYQNTQGTQNENDPNNTTIFVGGLDSNVTDDHLRQVFSQFGELVHVKIPVGKRCGFVQFANRACAEEALLMLNGTQLGGQNIRLSWGRSPSNKQDASAGVVQPQPDPNQWNGGYYGYNQGYEAYGYAPPPQDPNMYAYGAYPAYGNYQQQQVRASCIC* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00310 420 SUPERFAMILY RNA-binding domain, RBD 169 355 IPR035979 GO:0003676
Eupl02g00310 420 FunFam Polyadenylate-binding protein RBP47B 76 156 - -
Eupl02g00310 420 Gene3D - 37 160 IPR012677 -
Eupl02g00310 420 Gene3D - 161 255 IPR012677 -
Eupl02g00310 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 351 IPR000504 GO:0003723
Eupl02g00310 420 MobiDBLite consensus disorder prediction 10 71 - -
Eupl02g00310 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 145 IPR000504 GO:0003723
Eupl02g00310 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 345 IPR000504 GO:0003723
Eupl02g00310 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 240 IPR000504 GO:0003723
Eupl02g00310 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 157 IPR000504 GO:0003723
Eupl02g00310 420 FunFam Polyadenylate-binding protein RBP45C 160 254 - -
Eupl02g00310 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 249 IPR000504 GO:0003723
Eupl02g00310 420 SMART rrm1_1 78 153 IPR000504 GO:0003723
Eupl02g00310 420 SMART rrm1_1 171 245 IPR000504 GO:0003723
Eupl02g00310 420 SMART rrm1_1 280 347 IPR000504 GO:0003723
Eupl02g00310 420 MobiDBLite consensus disorder prediction 1 71 - -
Eupl02g00310 420 CDD RRM3_NGR1_NAM8_like 278 349 - -
Eupl02g00310 420 Gene3D - 256 361 IPR012677 -
Eupl02g00310 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 64 355 - -
Eupl02g00310 420 CDD RRM2_SECp43_like 169 248 - -
Eupl02g00310 420 CDD RRM1_SECp43_like 78 158 - -
Eupl02g00310 420 MobiDBLite consensus disorder prediction 350 369 - -
Eupl02g00310 420 FunFam Polyadenylate-binding protein RBP45C 256 360 - -
Eupl02g00310 420 SUPERFAMILY RNA-binding domain, RBD 39 156 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00310 Eupl-Chr2 3583995 3592505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00310 76 404 Eukaryotic Initiation Factors Gene Family AT2G23350 28.818 2.04e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00310 - - nnu:104612820 648.662