Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00283 ATGGAAGAAGAGAGGTTCGTCTCCAGAGAAAACCCTAGAAATCTAGGGTTTCTACAAGAGCGTGTTGGTCCAAGCAGCAACAACAAAGTCATGCCCTCAGAGCTGATCCAAAAGCCTCCTCCACCGATTCTCGATCGATTTAGGGCTCTGTTGAAGGAGAGAGAAGAGGAATTGAGAGTTTCGGACGACGAAGACGATGACGACGTTCCAGCACCAAGCACTGAAGAGATCATTCGGCTTTACGAAGTTGTTTTGTCGGAGCTTACTTACAATTCGAAGCCTATTATTACAGAACTTACGATTATCGCTGGAGAGCAGAGGGAGCATGGGGAGGGCATTGCTGATGCAATTTGCGCCCGAATCATCGAGGTTCCGGTTGAGCAGAAGTTGCCTTCTTTATATCTTCTGGATAGTATTGTAAAGAACATTGGGCGTGAATACGTGAGGTACTTTGCTTCCCGCCTCCCCGAGGTGTTTTGTGAGGCATACATGCAAGTTAACCCTAACTTGCATCCTGCCATGCGCCACCTCTTTGGGACCTGGTCAGCAGTATTCCCACCTTCAGTACTTCGCAAGATTGAGGTCAAACTACAGTTCTCTCCCCCCGTGAACCAACAGTCTTCTGGCTTGACAGCTTTGAGATCTTCTGAATCTCCATCTCCTCGTCCAGCTCATGGTATACATGTCAATCCAAAATACTTGGAGGCAAGGTGTCAATTTGAACAATCAACGGTGGTAGATATGCGCGAAAGAGATCCCAACAATAGTGCTGCACGCATGACAGCCTTTGAAGGAGAAAGAATGGAGAGAAATGCTTCCGCAAGTCCCAAAGGATGGTCTGGAGCTTCTCCGAAATTCCATGACATTCAACATTCCAGAGGAATTTCTTCAAGTCTACAGACATATGGACAAAAACCTGCCATTGGCTATGGTGAATATGATATTGATCATGCAGAGGTTATCTCCCCACAGGTTGGGCCCCGAAGATTAGGCTCGCCTGGAATAGTGGCCCTAACATCTTCTATAGGTGGAGCTGAAAGGCTACTCCCTTCAAAATCTAGGCTTTTAAGGTCCTCCTCTCCTTCAAGAATAGGGCCTGCTAGGTCTTTATCACCATCAGGTGATGGGTTTGTTAGAAACAGTTCTCCTGGAAGGGCTGTTGAAAGGGCCTCTCCATCTCATTCTCGATTTGAATATGGACCTGGCAGAGTGAGTGAAAGGGATGGGGAGAAGAATGATTTGTGGATAAGACATTGGTCGGATGATAACCCTCAGCGGCTAGAAACTTTTAGTGCATACAACCTCAGTAATGGATGTGATCAGCAAAGGCCAAGAGCTTTAATTGATGCTTATGGAAATAACAGAGGGAAAAGCACTCCGAACAAGAAGAATCTGAAGCTTGAGCGGCTTGATGTAAATGGCATAAACAGTGAGGCAACTATGAGAAGATGGCAGAATACTGAAGAAGAAGAATACGTTTGGGAAGATATGAGCCCAACTTTAGCAGACCGTAATAGGAGTAATGATCTCATTCCATCCGATCTCCCTCTTGGAAGCTTAAGCACAAGAACTGGCTTAGGAAGACCAACAGCTGCACTTTTGGAACCTGATTTCAGAAGGGGCAATTGGCCTAGGCAATCTCAGCTGCCTATGGGGGATGATTCTGCTGTTATCACTGAAGATGGGATCTCTATCCTGGGTCCTGGCCGTGGTTCTCTGAGTAAGAAAATTTTGGGCGGTCCAGGAACTCGAAATGAGGTAACTCAGGTTCAGGGTCCTCATTATTCTCAAGAGCCCTGGAATTTACCGCACCACTTCACCCAATCTTCACAACAACAACGCAACACCAAAGAAAGTAGAAGGCCTGTTCAGATGTCTTTTCCAGCAACGGGAATAGATCGACCCTCTGGTCAGAAAATGCCTTCTCTGTTCGATAATGTTCCGGATACTGAAGCACAATTCCAGAGGCTCTCAAGCGTAATGTCCAGAATGGGATCTTCAAGCTCTGACTCATTGAATGTGGAGGTGGAGAAGCATTTGGGACAAAGGCCTCATTCACCTTCCATGGCCCCACTGATATGGCCTCCGGTGAATGTGCATAAATCTCAACCGCTGCCTATGATATCCATTCTTCCGCAACAGAAGCAGATAAAAGGTCAGTTTGATTTCATGGATGCTAACAAGTCACTCATGAATCAAGGCCCAAATAAGTCATTGATTTTGCCTCGGCAGCAGTTAGATGCTGTTGAAAGGAAAGACCTAAGTTCAAATAAGCTGCTGCAGTTGCCTAATCAACAAGCTGGGTTGATTTCTTTGAATCATCGAAGCCAGGGACAAGCTGCTCTTTTACAGCCACAATTGCTTCAGGAGGCTCGAGATAGTTTTATTCCGTCAAACTCAGCTCAGGTTTCATCTCGTTTAGTGGCACAACCCTTGAATCATAAACATACTCCACAAGGGCACAGTGCTGTTATTAATACAATTTCGTTAAATCAAATACCTGGGATGCCGCCTTCATCTGTAACAATCCACAGTGTACCAAATACCTCATTGCAATTGCAGGGGGGAGCTTTACCTCCACTACCTCCTGGGCCTCCTCCTGCCTCATCGCAGATGGGACCCACGTCTCAAAATATGGGTTCCATTGCATCTCACCCACCAGTAGGCAGTGCGTTTTCGGGTCTGATTAGTTCTCTCGTGGCTCAAGGTTTGATCTCATTAACAACACCAGGTTCAGTTCAGGATTCTGTAGGAGTTGAATTTAATCCAGATCTTCTTAAGGTACGGCACGAGTCTGCAATAAAAGCTCTGTATGCTGATCTTCCAAGACAGTGCACAACATGTGGTCTACGTTTCAAGTGCCAAGAGGAGCACAGTAGTCACATGGATTGGCATGTGACCAAAAATCGGATATCTAGAGGCCGTAAACAGAAGCCCTCTCGCAAGTGGTTTGTTAGTACCAGTGTGTGGCTCAGTGGTGCAGAGACATTAGGAACTGATGCTGTTCCTGGGTTTTTGCCCCCTGAAGCTGTTGTAGAAAAAAAAGACGATGAAGAAATGGCTGTTCCTGCTGATGAGAATCAGAACGTATGTGCGCTGTGTGGAGAGCCTTTTGATGATTTTTATAGTGACGAGACCGAGGAGTGGATGTATAAAGGGGCTGTGTATCTGAATGGGCCTGATGGATCAACAGAAGGCATGGATAGGTCTCAGTTGGGTCCTATTGTGCATGCTAAGTGTAGGTCCGAGTCTACAGTCATTTCCCCTGAAGATTTTGGACTAGATGAAGGGGGAAATACTGAAGAGGGTAGTCAAAGAAAAAGGATGCGGGTTTAG 3336 0.4616 MEEERFVSRENPRNLGFLQERVGPSSNNKVMPSELIQKPPPPILDRFRALLKEREEELRVSDDEDDDDVPAPSTEEIIRLYEVVLSELTYNSKPIITELTIIAGEQREHGEGIADAICARIIEVPVEQKLPSLYLLDSIVKNIGREYVRYFASRLPEVFCEAYMQVNPNLHPAMRHLFGTWSAVFPPSVLRKIEVKLQFSPPVNQQSSGLTALRSSESPSPRPAHGIHVNPKYLEARCQFEQSTVVDMRERDPNNSAARMTAFEGERMERNASASPKGWSGASPKFHDIQHSRGISSSLQTYGQKPAIGYGEYDIDHAEVISPQVGPRRLGSPGIVALTSSIGGAERLLPSKSRLLRSSSPSRIGPARSLSPSGDGFVRNSSPGRAVERASPSHSRFEYGPGRVSERDGEKNDLWIRHWSDDNPQRLETFSAYNLSNGCDQQRPRALIDAYGNNRGKSTPNKKNLKLERLDVNGINSEATMRRWQNTEEEEYVWEDMSPTLADRNRSNDLIPSDLPLGSLSTRTGLGRPTAALLEPDFRRGNWPRQSQLPMGDDSAVITEDGISILGPGRGSLSKKILGGPGTRNEVTQVQGPHYSQEPWNLPHHFTQSSQQQRNTKESRRPVQMSFPATGIDRPSGQKMPSLFDNVPDTEAQFQRLSSVMSRMGSSSSDSLNVEVEKHLGQRPHSPSMAPLIWPPVNVHKSQPLPMISILPQQKQIKGQFDFMDANKSLMNQGPNKSLILPRQQLDAVERKDLSSNKLLQLPNQQAGLISLNHRSQGQAALLQPQLLQEARDSFIPSNSAQVSSRLVAQPLNHKHTPQGHSAVINTISLNQIPGMPPSSVTIHSVPNTSLQLQGGALPPLPPGPPPASSQMGPTSQNMGSIASHPPVGSAFSGLISSLVAQGLISLTTPGSVQDSVGVEFNPDLLKVRHESAIKALYADLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRISRGRKQKPSRKWFVSTSVWLSGAETLGTDAVPGFLPPEAVVEKKDDEEMAVPADENQNVCALCGEPFDDFYSDETEEWMYKGAVYLNGPDGSTEGMDRSQLGPIVHAKCRSESTVISPEDFGLDEGGNTEEGSQRKRMRV* 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00283 1111 ProSitePatterns Zinc finger C2H2 type domain signature. 945 965 IPR013087 -
Eupl02g00283 1111 CDD CID_Pcf11 78 198 IPR047415 -
Eupl02g00283 1111 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 41 1095 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Eupl02g00283 1111 MobiDBLite consensus disorder prediction 1086 1111 - -
Eupl02g00283 1111 MobiDBLite consensus disorder prediction 607 638 - -
Eupl02g00283 1111 MobiDBLite consensus disorder prediction 607 623 - -
Eupl02g00283 1111 MobiDBLite consensus disorder prediction 1 41 - -
Eupl02g00283 1111 MobiDBLite consensus disorder prediction 853 879 - -
Eupl02g00283 1111 MobiDBLite consensus disorder prediction 206 228 - -
Eupl02g00283 1111 MobiDBLite consensus disorder prediction 353 367 - -
Eupl02g00283 1111 Gene3D - 69 198 IPR008942 -
Eupl02g00283 1111 ProSiteProfiles CID domain profile. 73 201 IPR006569 -
Eupl02g00283 1111 FunFam polyadenylation and cleavage factor homolog 4 70 198 - -
Eupl02g00283 1111 SUPERFAMILY ENTH/VHS domain 72 202 IPR008942 -
Eupl02g00283 1111 SMART 558neu5 76 198 IPR006569 -
Eupl02g00283 1111 MobiDBLite consensus disorder prediction 266 289 - -
Eupl02g00283 1111 MobiDBLite consensus disorder prediction 353 408 - -
Eupl02g00283 1111 Pfam CID domain 85 192 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00283 Eupl-Chr2 3316147 3325523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00283 25 550 C2H2 Transcription Factor Family AT4G04885 43.284 9.86e-104 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00283 K14400 - nnu:104610875 1368.21