Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00280 ATGCCAGCCGGAATAATGATTCCGGCTAGACACGTGCCGCCGATGATGGGAAGGAACGGAAAGATAGCTGGATTTGGGTCGTCTTCGGGGCTTACGCTCGGTCAGTCTAACATGTTGGACGGTCAACACATGCCGCTCGAGATGACCCAAAACACCCCCGAGAGCGAAATGGCGAAGATCAGAGATGATGAATTCGAGAGCAAATCCGGCAGTGAAAACCTCGAAGGCGCTTCCGGTGACGATCAAGATCCCAATCAACGTCCACGAAAGAAGCGTTACCATCGCCATACCCAGCATCAAATCCAAGAAATGGAAGCTTTTTTCAAAGAATGCCCTCATCCAGATGACAAGCAAAGGAAGGAGCTGAGCCGTGAACTAGGGTTAGAGCCTTTGCAAGTCAAATTTTGGTTCCAAAATAAGCGTACCCAAATGAAGAACCAGCATGAACGCCATGAAAACTCACAGCTGAGATCCGAGAACGAAAAGCTCCGGGCAGAGAATATGAGGTACAAAGAAGCGCTTAGTACCGCTTCATGTCCCAACTGTGGAGGCCCAACAGCTATTGGTGAGATGTCTTTTGACGAGCATCATTTGAGAATTGAGAACGCTCGACTAAGAGAAGAGATTGACAGGATTTCCGGTATAGCTGCAAAATATGTTGGTAAACCTATGGGTTCGTATCCTCTTCTTTCTTCTCCGATTCCTCCCCGTTCGCTCGACCTTGGGGTTGGAAACTTTGGGGTGCAACCAGGTGTTGGTGGGGAGATTTTCGGGGCGGGCGATCTTCTTAGGTCGGTCTCTGTGCCTACTGAGGCGGATAAGCAGATGATCATTGAACTTGCAGTTGCAGCAATGGAAGAGCTAATCAGAATGGCTCAACTCGGGGAACCCTTGTGGCTTCCAGCCGGCCTCGACGATGCTACCGAGATACTATGCGAAGATGAATACATCCGGACATTCCCAAGGGGAATTGGGCCAAAACCCTTTGGGTTGAAATCCGAAGCTTCTCGAGAGAATGCTGTTGTTATCATGAATCATATTAACCTTGTTGAGATCCTTATGGATGTGAATCAATGGTCAAGTGTTTTTTCGAGTATAGTCTCAAGAGCCATAACAATAGAAGTCTTATCAACAGGAGTAGCGGGAAACTACAATGGAGCCCTGCAAGTGATGACAGCAGAATTCCAAGTCCCTTCACCTCTTGTTCCGACTCGTGAGAGTTTGTTCGTGAGGTACTGCAAACAACATGCCGATGGAACTTGGGCAGTGGTTGATGTTTCCTTGGACCATTTACGCCCTGGCCCAGTAATGAGATGTCGAAGAAGGCCATCAGGCTGTTTAATCCAAGAATTGCCAAATGGTTACTCGAAGGTTATGTGGGTTGAACATGTAGAAGTAGATGACAGAGCTGTTCACAGTATATACAAATCACTAGTTAACTCTGGCCTTGCATTTGGCGCAAAGCGTTGGGTTGCTACCTTGGATCGACAATGCGAACGCCTTGCAAGTGTAATGGCTAGTAACATTCCTGCTGGAGATGTTGGTGTGATAACGAGTCATGAAGGTAAAAAAAGTATGTTGAAGCTAGCTGAGAGGATGGTGGTGAGTTTTTGTGCTGGAGTGAGTGCCTCTACTGCTCACACATGGACTACATTATCTGGAAGTAGCGCTGAAGATGTGAGGGTCATGACCAGGAAGAGCATAGATGATCCAGGCAGGCCCCCTGGTATTGTGCTAAGTGCAGCCACTTCCTTCTGGCTTCCAGTCCCACCAAAGAGAGTTTTTGATTTCCTTCGGGATGAGAACTCTCGAAATGAGTGGGATATCCTGTCAAATGGTGGTGTCGTTCAAGAAATGGCCCACATTGCTAATGGCCGTGATCCTGGCAACTGTGTCTCTTTACTGCGCGTGAATAGTGCAAATTCCAGCCAAAGCAACATGCTGATATTACAAGAGAGTTGCACAGACTCAACGGGCTCTTTCGTAATTTATGCTCCAGTTGATATCCATGCAATGAATGTGGTTCTAAATGGGGGAGACCCAGATTATGTAGCTCTCCTGCCCTCAGGGTTTGCCATACTCCCTGATGGGCCGACAATGCATGGAGGTGGAATTGCTGAGGTTGGGTCTGGTGGATCTCTTCTGACTGTTGCATTTCAGATCTTGGTTGATTCGGTTCCGACGGCAAAACTCTCTCTCGGATCAGTGGCAACTGTAAACAGCCTCATTGCTTGCACTGTTGAAAGGATCAAGGCCGCGGTTACATGCGACAATGCATGA 2280 0.4789 MPAGIMIPARHVPPMMGRNGKIAGFGSSSGLTLGQSNMLDGQHMPLEMTQNTPESEMAKIRDDEFESKSGSENLEGASGDDQDPNQRPRKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENSQLRSENEKLRAENMRYKEALSTASCPNCGGPTAIGEMSFDEHHLRIENARLREEIDRISGIAAKYVGKPMGSYPLLSSPIPPRSLDLGVGNFGVQPGVGGEIFGAGDLLRSVSVPTEADKQMIIELAVAAMEELIRMAQLGEPLWLPAGLDDATEILCEDEYIRTFPRGIGPKPFGLKSEASRENAVVIMNHINLVEILMDVNQWSSVFSSIVSRAITIEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESLFVRYCKQHADGTWAVVDVSLDHLRPGPVMRCRRRPSGCLIQELPNGYSKVMWVEHVEVDDRAVHSIYKSLVNSGLAFGAKRWVATLDRQCERLASVMASNIPAGDVGVITSHEGKKSMLKLAERMVVSFCAGVSASTAHTWTTLSGSSAEDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDPGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIHAMNVVLNGGDPDYVALLPSGFAILPDGPTMHGGGIAEVGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAVTCDNA* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00280 759 CDD homeodomain 89 148 IPR001356 GO:0003677
Eupl02g00280 759 SMART START_1 279 500 IPR002913 GO:0008289
Eupl02g00280 759 SMART HOX_1 88 151 IPR001356 GO:0003677
Eupl02g00280 759 MobiDBLite consensus disorder prediction 25 39 - -
Eupl02g00280 759 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Eupl02g00280 759 CDD START_ArGLABRA2_like 274 499 - -
Eupl02g00280 759 MobiDBLite consensus disorder prediction 1 39 - -
Eupl02g00280 759 Gene3D - 344 502 IPR023393 -
Eupl02g00280 759 FunFam Homeobox-leucine zipper protein HDG1 78 163 - -
Eupl02g00280 759 Pfam START domain 280 500 IPR002913 GO:0008289
Eupl02g00280 759 MobiDBLite consensus disorder prediction 51 97 - -
Eupl02g00280 759 Coils Coil 146 173 - -
Eupl02g00280 759 SUPERFAMILY Bet v1-like 521 751 - -
Eupl02g00280 759 Pfam Homeodomain 90 146 IPR001356 GO:0003677
Eupl02g00280 759 SUPERFAMILY Homeodomain-like 77 147 IPR009057 -
Eupl02g00280 759 Gene3D - 77 164 - -
Eupl02g00280 759 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Eupl02g00280 759 FunFam Homeobox-leucine zipper protein GLABRA 2 279 499 - -
Eupl02g00280 759 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 86 754 IPR042160 -
Eupl02g00280 759 MobiDBLite consensus disorder prediction 56 70 - -
Eupl02g00280 759 SUPERFAMILY Bet v1-like 270 502 - -
Eupl02g00280 759 ProSiteProfiles START domain profile. 270 503 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00280 Eupl-Chr2 3272662 3277743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00280 37 757 Homeobox Transcription Factor Family AT4G04890 77.371 0.0 1154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Eupl02g00280 START 1e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00280 K09338 - msin:131221379 1356.66