Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00208 ATGGCGATGAGAGGAGCAGCGGCCGCGGCGGTATCTCGTGGGCTTAGCAGACGGCTTCTCTCGAACTTTGCTTTCGCTCCTCCGCCCACAGCTGCAGCTACGGCTCCTCCCGCAGCCGAACCTTCTACGAACCTTTTCGTCTCAGGGCTTAGTAAACGTACTACATCAGATGGACTTAGAGAAGCCTTTTCAAAATTTGGTCAAGTTATGCATGCTAGAGTTGTGACCGACCGTAATTCGGGATATTCCAAGGGGTTTGGTTTCGTAAGATATGACACTTTAGAAGAGGCTGCAGAAGGTATAAAGGGCATGGATGGCAAGTTTCTGGACGGTTGGGTTATTTTTGCAGAGTATGCAAGACCAAGAACACAGCAACCACCTCCTGAAAACACTGGTGCTTTTCCATCGTCCCCAAGATATTGA 423 0.4965 MAMRGAAAAAVSRGLSRRLLSNFAFAPPPTAAATAPPAAEPSTNLFVSGLSKRTTSDGLREAFSKFGQVMHARVVTDRNSGYSKGFGFVRYDTLEEAAEGIKGMDGKFLDGWVIFAEYARPRTQQPPPENTGAFPSSPRY* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00208 140 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 121 IPR000504 GO:0003723
Eupl02g00208 140 SUPERFAMILY RNA-binding domain, RBD 29 130 IPR035979 GO:0003676
Eupl02g00208 140 MobiDBLite consensus disorder prediction 120 140 - -
Eupl02g00208 140 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 111 IPR000504 GO:0003723
Eupl02g00208 140 PANTHER NUCLEOLAR PROTEIN 8 27 128 - -
Eupl02g00208 140 SMART rrm1_1 44 117 IPR000504 GO:0003723
Eupl02g00208 140 MobiDBLite consensus disorder prediction 124 140 - -
Eupl02g00208 140 Gene3D - 24 129 IPR012677 -
Eupl02g00208 140 FunFam RNA recognition motif-containing protein 23 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00208 Eupl-Chr2 2556197 2561074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00208 44 125 Eukaryotic Initiation Factors Gene Family AT2G23350 34.146 2.30e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00208 - - nnu:104604956 191.815