Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00191 ATGGCGACTCAGTTTCCGGACGATTTCAAGTGTCCGATTTCGTTAGAGATGATGTCCGACCCGGTGATCATTTCATCCGGTCATTCCTTTGATCGATCTTCCATCCAACGGTGGTTCGACTCCGGCAATAGGACCTGTCCAATCACCAAACTGCCCCTCCCTCAACACCCTTCTCTCATCCCTAACCATGCTCTCAGAAGCCTCATTTCCAACTTTACCCTCGATTCTTCTCCAAAACTACAGCCTCACTCAGATCCTCAATCCCTAATCTCAATTCTCACCTCTTCATCTTCTCCTCTTGACTCCAAACTTGACTCGCTCCACCAACTCAACCGTCTCTCTAAACGGAATCCTGGTTTCTGTCAGCGGTTAACCGAGTTCGGTGCTGTTTCTGCCGTTCTCAAATTGGTTGGCTCTGACGATCCGAGCCTCCAAGAATCGGCGCTTTTGCTCCTGTTAAATCTCAGTTTGGATGACGACAACAAGGTGGGTTTAGTCGCCGACGGTGCAATTGGGCGTGTCGTCGCAGCGTTGCGAGGTGGAACCCCAAATTGCCGGGCGTATGCGGCGACGATGCTGACGAGTCTGGCGATGGTGGAAGTGAATAAGGGAACAATCGGTGCGTACCCATCTGCGATTAAAACGCTGGTTTCGCTTCTTCGGGACGGAAAAGGGAGAGAGAGGAAAGAAGCGGCAACGGCTCTTTACGTACTCTGTTCGTTCCCGGATAATAAGAAGAGAGCGGTGGAATGTGGGGCGGTGCCAATTTTGATGGAAATGGCCGATTCGGGGTTCGAGAGGGCGGTAGAGGTTCTGGGTCTGTTAGCTAAATGCAGGGAAGGGAGAAAAGAGATGGGGAGGTTTGATGGGTGTGTGATGATTTTGGTTCGAGTGTTATGGAACGGGAGTTCACGGAGCATAGTCTATGCCCTCGCTGCGTTGAATTCGCTATGTTCTCATAGTGAGGACATTAGTTTGGAGATTAGGAAACATGGTGGTCTGGAGATTTGTTTGGGATTGGCGGAAGATGAGAATGAGAAAATTAACACAAATGCCTCGAATTTGGTTCAAGCTCTGCGGAGGTGCCAGTCAAGGGGTTGA 1101 0.5032 MATQFPDDFKCPISLEMMSDPVIISSGHSFDRSSIQRWFDSGNRTCPITKLPLPQHPSLIPNHALRSLISNFTLDSSPKLQPHSDPQSLISILTSSSSPLDSKLDSLHQLNRLSKRNPGFCQRLTEFGAVSAVLKLVGSDDPSLQESALLLLLNLSLDDDNKVGLVADGAIGRVVAALRGGTPNCRAYAATMLTSLAMVEVNKGTIGAYPSAIKTLVSLLRDGKGRERKEAATALYVLCSFPDNKKRAVECGAVPILMEMADSGFERAVEVLGLLAKCREGRKEMGRFDGCVMILVRVLWNGSSRSIVYALAALNSLCSHSEDISLEIRKHGGLEICLGLAEDENEKINTNASNLVQALRRCQSRG* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00191 366 CDD RING-Ubox_PUB 6 53 IPR045210 -
Eupl02g00191 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 128 170 IPR000225 GO:0005515
Eupl02g00191 366 PANTHER U BOX DOMAIN-CONTAINING 6 340 - -
Eupl02g00191 366 SUPERFAMILY RING/U-box 3 76 - -
Eupl02g00191 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 70 IPR013083 -
Eupl02g00191 366 SMART arm_5 202 240 IPR000225 GO:0005515
Eupl02g00191 366 SMART arm_5 158 198 IPR000225 GO:0005515
Eupl02g00191 366 SMART arm_5 278 319 IPR000225 GO:0005515
Eupl02g00191 366 SMART arm_5 241 277 IPR000225 GO:0005515
Eupl02g00191 366 SMART arm_5 117 157 IPR000225 GO:0005515
Eupl02g00191 366 Pfam U-box domain 6 73 IPR003613 GO:0004842|GO:0016567
Eupl02g00191 366 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Eupl02g00191 366 Gene3D - 267 360 IPR011989 -
Eupl02g00191 366 Gene3D - 71 266 IPR011989 -
Eupl02g00191 366 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Eupl02g00191 366 SUPERFAMILY ARM repeat 87 359 IPR016024 -
Eupl02g00191 366 FunFam RING-type E3 ubiquitin transferase 4 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00191 Eupl-Chr2 2309002 2311957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00191 1 359 U-box Gene Family AT4G21350 61.308 3.33e-146 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00191 - - vvi:100852694 528.094