Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00185 ATGGTGAAAGATCGCAAGAACATCTCTTCTTCTTCTTCTAAGACTTGCCCTCACTTCTTCAAAGTATACCTCCCCCACCTCAGTTCCCAACGACTGAAAATACCAACAACTTTTATCAACAACTTTAATGGAGTGGTACCCCAAAAGACGATCCTCAATGGTCCTCTTGGGAGGTTTTGGCATGTGGAGGTGGAAAGAGTTGAGGATGACTTTTTTTTCCAGAACGGGTGGCAGGGTTTTGTGAAAGATTGTTCTTTAAAACTTGGAGAATTTCTAGTTTTCAGATATGATGCTAATTCAGAATTCGATGTTAAAATATTTGATAACAGTGGATGTGAAAAGGAAGAGACTTTAGCTTATAGCAACAGTGAAAAGATGACATGTTTTGTAAAGGAGGAGGCTGAACCAGAAGCAAGGGAAACTTTTAGCAAGCCTACTCATGGTTTCAAGCGAAAATATTCGGAAAGAAGTTTGAAAAATATTGGCAAAACTAGTCGTAGACGATCAAAAAGGACTGCTTCTGTCAAGGTAAAAGAAGATGCGGTCTTTGAAGAAGATGATTTTGTTGAACCAAACCATCCACATTTTACGGCATTTGTACCATCTAAGCCATATGATTTGATCCCAAATAAAGAAAAGCCGCGTGGTTTCGGTACAACAGCAACAGATAATGTTGGAGTGGGCAGTAAAATGGATGGTGGTGGCATTGATAGGGGAAAGCTTATGCAATTGGGGAAAAATATTGAGGGTAATAGGTGGAACAGCTTGCTTCAATCTCATAATGATGACACAAATGGGTCACTTGGGAAAATTAAAAGAGAGCAAGTTATACCTCCTATTGGGGAAGTTGGAAGCACTGGCTTTTCAAATTTAAATCAAGCATCCATTGGATCATCTCAATTTGCCAAACTAGATAACAGTAAAGAAACTGATGGGGTTAAAGATATGTATGAGTCACAATCGCAAACATGCTTGAGTGGTGCCTCTTTAAGAACCCCAACTCTTGAACTGCCCCTTCCTGGTGCAGTTGTTGAAGGAAGGGAACAGAGCAAAATTCCGTCTCCATATCAACAAGGACAAAGGTCCTGCCATCTTTTTCCCAAGTCCCCGAAGATGGGCCCTGTCACAGGTACATTGGCATCAAAAGACATACTCCCACAGATATTTGTTGCAAGGCCACCTGTCGAAGGACGAGGCTGGAACCAGTTGCTTCCACGTTATTGGCCGGGGATTGCCGACCAAGAACTGCAGCAAATATCAGGAGATTCAAATTCCACAATTGTGCCGCTGTTCGAGAAGGTTCTCAGTGCCAGCGATTCTGGCCGAATTGGTCGTTTAGTTCTCCCAAAGGCATGTGCTGAGGTATATTTTCCTCCTCTCTCTCAACCAGAAGGCCTTCCGTTAAGGATTCAAGATGCAAAGGGGAAAGACTGGGTGTTTCAGTTCAGATTTTGGCCTAATAACAACAGCAGGCTGTACGTCTTAGAGGGTGTAACACCTTGCATACAGTCCATGCAATTACAAGCTGGCGATACTGTAACATTCAGCCGGGTAGATCCCGGAGGAAAACTGGTTTTGGGGTTTCGAAAGGCGTCAAACTCTTTGACTCTGCAGGAACCCCCAGTTTTTGGGAAGAAGACTATTTTCACAGTCCGGCCACCTGGGGGACAGGATCAATTGGCTGAGTGTGATAGTTGCTCCAAATGGCGAAGGTTGCCTGTCGATGTTCTTCTCCCTCCAAAGTGGACATGTGCTGACAATGCTTGGGACTTGAAAAGGTGTGTGTGTTCTATACTGGATGAGTTGAACCTGAAGGAACTAGTAAATCTTCAGAGACTGATTAAGGATTTAAAAAATGAGAGAGTTGCAGCAAGCAATAAGCCAGCGCAAGGGTACTATCGCGGTTCTTGA 1911 0.4338 MVKDRKNISSSSSKTCPHFFKVYLPHLSSQRLKIPTTFINNFNGVVPQKTILNGPLGRFWHVEVERVEDDFFFQNGWQGFVKDCSLKLGEFLVFRYDANSEFDVKIFDNSGCEKEETLAYSNSEKMTCFVKEEAEPEARETFSKPTHGFKRKYSERSLKNIGKTSRRRSKRTASVKVKEDAVFEEDDFVEPNHPHFTAFVPSKPYDLIPNKEKPRGFGTTATDNVGVGSKMDGGGIDRGKLMQLGKNIEGNRWNSLLQSHNDDTNGSLGKIKREQVIPPIGEVGSTGFSNLNQASIGSSQFAKLDNSKETDGVKDMYESQSQTCLSGASLRTPTLELPLPGAVVEGREQSKIPSPYQQGQRSCHLFPKSPKMGPVTGTLASKDILPQIFVARPPVEGRGWNQLLPRYWPGIADQELQQISGDSNSTIVPLFEKVLSASDSGRIGRLVLPKACAEVYFPPLSQPEGLPLRIQDAKGKDWVFQFRFWPNNNSRLYVLEGVTPCIQSMQLQAGDTVTFSRVDPGGKLVLGFRKASNSLTLQEPPVFGKKTIFTVRPPGGQDQLAECDSCSKWRRLPVDVLLPPKWTCADNAWDLKRCVCSILDELNLKELVNLQRLIKDLKNERVAASNKPAQGYYRGS* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00185 636 Pfam B3 DNA binding domain 431 531 IPR003340 GO:0003677
Eupl02g00185 636 Pfam B3 DNA binding domain 19 109 IPR003340 GO:0003677
Eupl02g00185 636 Gene3D - 554 603 - -
Eupl02g00185 636 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 235 538 - -
Eupl02g00185 636 CDD B3_DNA 17 108 IPR003340 GO:0003677
Eupl02g00185 636 Gene3D - 10 112 IPR015300 -
Eupl02g00185 636 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
Eupl02g00185 636 SUPERFAMILY DNA-binding pseudobarrel domain 12 112 IPR015300 -
Eupl02g00185 636 Gene3D - 409 535 IPR015300 -
Eupl02g00185 636 CDD B3_DNA 429 530 IPR003340 GO:0003677
Eupl02g00185 636 Pfam CW-type Zinc Finger 561 601 IPR011124 GO:0008270
Eupl02g00185 636 ProSiteProfiles Zinc finger CW-type profile. 554 604 IPR011124 GO:0008270
Eupl02g00185 636 SMART B3_2 19 110 IPR003340 GO:0003677
Eupl02g00185 636 SMART B3_2 431 532 IPR003340 GO:0003677
Eupl02g00185 636 SUPERFAMILY DNA-binding pseudobarrel domain 428 530 IPR015300 -
Eupl02g00185 636 ProSiteProfiles B3 DNA-binding domain profile. 431 532 IPR003340 GO:0003677
Eupl02g00185 636 Coils Coil 607 627 - -
Eupl02g00185 636 FunFam B3 domain-containing transcription repressor VAL1 397 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00185 Eupl-Chr2 2141193 2149918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00185 539 627 B3 DNA Binding Superfamily AT4G32010 53.933 4.37e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Eupl02g00185 B3 8.9e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00185 K09287 - nnu:104593767 473.011