Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00176 ATGTTAACTCCAATGGAACTCCTTAGATCGAATCTCTCTCGAGTTCGAATTCCAGAGCCTACCAATCGAATTTACAAGCATGAATGCTGCATTTCTTTTGATACTCCGAGATCTGAGGGTGGGTTGTTCGTCGATATGAGCTCGTTTCTTGCGTTTGGTAAGGACTGCGTGGGTTGGAACTACGAGAAGTCTGGAAATCCAGTTTATCTGCATATAAAACAGACAAGAAAACCGGTTCCAGAAGATAGACCTCTCAAGAAACCGACACTTCTAGCAATAGGTGTCGACGGGGGATTTGACAACCATGAGCCTGAGTACGAAGAAACTCACAACATCGTCATATTGCCCGAATTTATCTCTCTTCCATTTCCTTCTGTGGAGCTTCCAGAAAAGGTCAGGTTGGCAGTCGATGCTATTTTAATGGCTGAGGGTGCTGAGCGGAAAGAGCAACTTGCATCTTGGACAGCTGATAAAAAAAAAATTAGTGCGTATGCGATGAATCTGCCGCAGATTGACACCGCTGTTTCTGTGCCTCCATCTGGGTGGAAATGCTGCAGGTGTGACAAGACTGATAATCTCTGGCTAAATCTAACTGATGGAATGATCTTTTGTGGGAGGAGAAACTGGGATGGGAGTGGTGGCAACAACCATGCTGTTGCACACTACAACGAAACAAAGTATCCTCTTGCTGTGAAGCTTGGGACTATAACTGCTGATTTGGAAGGAGCAGATGTTTTCTCTTATCCGGAGGATGAAAGTGTTGAGGACCCGCTATTAGCTCAACATTTGGCTTTTTTTGGCATTGATTTTTCATCATTGCAAAAGACTGAAATGACAACTGCTGAAAGGGAGCTTGACCAGAATACCAATTTTGATTGGAACCGCATACAAGAAAGTGGACAAGAAGTGGAACCACTATTTGGACCAGGTTATACAGGACTAGTCAATCTTGGAAACAGTTGCTATTTGGCATCAACAATGCAAGTAGTATTCTCAACTCATTCATTCTATTCACGATATTACAAGCACCATAGTTTGAAAATGGCTTTTGAGAGTGCTCCCGCTGATCCAACTTTAGATTTGAACTCTCAGTTGACAAAACTGGGGCATGGTTTGCTGTCTGGTAAATATTCAGTTCCAGTGCAGGAGAAAGATGAAAATGAAAAATCTACAAAACCAACTGCAAGTACTAAACAGGAAGGGATACCCCCTCGCATGTTCAAGACAGTTATTGCTGCTAGCCATCCCGAATTTTCTAGTATGAGGCAACAGGATGCCTTAGAGTTCTTCCTACATCTTCTTGACCAAGTTGAACGAGCTAATGCTGGAAAATCTGAGTTAGATCCCTCGAGGAGTTTCAAGTTTGGTATTGAAGAGCGACTTCTGTGTTCATCAGGAAAGGTTGCTTACAATGGAAGAGTTGATTACATTCTTTCTCTAAATATCCCATTGCATGAAGCTACCAATAAAGAACAGCTAGAAGCCTTTCAAGAGTTGAAAGCAGAAAAGAGTTTGGAAGGAAAAGAAGTGGTGCCTTATTCTATCAGATCAGGTGATGAAATTGTACGCCCAAGGGTGCCCCTAGAGGCATGCTTGGCAAGCTTTTCAGCTCCAGAGGAGGTACACGATTTTTACAGCACTGCCTTAAATGCTAAGACAACAGCAATCAAAACCACTGGCTTGACTTCATTCCCAGATTATCTAGTGTTGCATATGCGTAAATTTTTAATGGAGGAAGGCTGGGTGCCAAAAAAGCTTGATGTCTATATAGACGTGCCTGATATTATTGATATTAGTCATATGCGCAGCAGGGGCCTCCAGCCAGGAGAAGAGCTACTACCAGAGGCAGGTGCTGGCGGTGAGTGGGAATCAAGGAAACCTTCAGCCAACGAGGATATTGTTTCCCAGCTTGCAGTAATGGGATTTAACTATCTTCATTGTCAGAAAGCTGCAATTAACACCTCCAATGTTGGATTAGAGGCGGCAATGAATTGGTTGCTCTCTCACATGGATGATCCAGATATAGATGATCCTATTTCCCAAGAGGTGCAAACCGCAGAAGTCCTCTTATCGTTTGTTGACCAATCGAAAGTTGATACTTTGGTTTCCTTTGGTTTTCAAGAAGAGATTGCTCGAAGGGCACTGAGGGCATCAGGTGGAGATATTGAGAAAGCAACGGATTGGATATTTAGCCATCCGGACATCTCTGATCAATCGGATATGGATGTTACGTCAAGCAGTGTGCAGTGTTCTCCCAATGCAGAATTACCTGATGGAGGAGGAAAATACAAGCTTATTGGACTCGTGAGCCACATTGGTACCTCTACTCAATGCGGACACTATGTGGCTCATGTGCGTAAAGACGGGAGATGGGTGATCTTCAATGATGACAAGGTCGGGGCCTCAATTAATCCCCCCAAGGACATGGGCTACTTGTATTTCTTCGAGAGACTCAACAGCTAA 2463 0.4361 MLTPMELLRSNLSRVRIPEPTNRIYKHECCISFDTPRSEGGLFVDMSSFLAFGKDCVGWNYEKSGNPVYLHIKQTRKPVPEDRPLKKPTLLAIGVDGGFDNHEPEYEETHNIVILPEFISLPFPSVELPEKVRLAVDAILMAEGAERKEQLASWTADKKKISAYAMNLPQIDTAVSVPPSGWKCCRCDKTDNLWLNLTDGMIFCGRRNWDGSGGNNHAVAHYNETKYPLAVKLGTITADLEGADVFSYPEDESVEDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQEVEPLFGPGYTGLVNLGNSCYLASTMQVVFSTHSFYSRYYKHHSLKMAFESAPADPTLDLNSQLTKLGHGLLSGKYSVPVQEKDENEKSTKPTASTKQEGIPPRMFKTVIAASHPEFSSMRQQDALEFFLHLLDQVERANAGKSELDPSRSFKFGIEERLLCSSGKVAYNGRVDYILSLNIPLHEATNKEQLEAFQELKAEKSLEGKEVVPYSIRSGDEIVRPRVPLEACLASFSAPEEVHDFYSTALNAKTTAIKTTGLTSFPDYLVLHMRKFLMEEGWVPKKLDVYIDVPDIIDISHMRSRGLQPGEELLPEAGAGGEWESRKPSANEDIVSQLAVMGFNYLHCQKAAINTSNVGLEAAMNWLLSHMDDPDIDDPISQEVQTAEVLLSFVDQSKVDTLVSFGFQEEIARRALRASGGDIEKATDWIFSHPDISDQSDMDVTSSSVQCSPNAELPDGGGKYKLIGLVSHIGTSTQCGHYVAHVRKDGRWVIFNDDKVGASINPPKDMGYLYFFERLNS* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00176 820 CDD UBA2_atUBP14 696 733 - -
Eupl02g00176 820 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 692 732 IPR015940 -
Eupl02g00176 820 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 312 818 IPR028889 -
Eupl02g00176 820 SUPERFAMILY Cysteine proteinases 308 818 IPR038765 -
Eupl02g00176 820 SMART Zf_UBP_1 183 238 IPR001607 GO:0008270
Eupl02g00176 820 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 763 781 IPR018200 GO:0004843|GO:0006511
Eupl02g00176 820 FunFam Ubiquitin carboxyl-terminal hydrolase 670 737 - -
Eupl02g00176 820 CDD UBA1_atUBP14 630 670 - -
Eupl02g00176 820 PIRSF UBP 5 819 IPR016652 GO:0004843|GO:0016579
Eupl02g00176 820 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 141 817 - -
Eupl02g00176 820 CDD Peptidase_C19B 313 816 - -
Eupl02g00176 820 Gene3D Cysteine proteinases 305 634 - -
Eupl02g00176 820 FunFam Ubiquitin carboxyl-terminal hydrolase 305 642 - -
Eupl02g00176 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 257 IPR013083 -
Eupl02g00176 820 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 313 328 IPR018200 GO:0004843|GO:0006511
Eupl02g00176 820 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 628 669 IPR015940 -
Eupl02g00176 820 Pfam Zn-finger in ubiquitin-hydrolases and other protein 184 257 IPR001607 GO:0008270
Eupl02g00176 820 Gene3D - 635 676 - -
Eupl02g00176 820 Pfam Ubiquitin carboxyl-terminal hydrolase 312 815 IPR001394 GO:0004843|GO:0016579
Eupl02g00176 820 Pfam UBA/TS-N domain 694 729 IPR015940 -
Eupl02g00176 820 Pfam Variant UBP zinc finger 15 78 IPR041432 -
Eupl02g00176 820 Gene3D - 679 737 - -
Eupl02g00176 820 SMART uba_6 694 731 IPR015940 -
Eupl02g00176 820 SMART uba_6 630 668 IPR015940 -
Eupl02g00176 820 FunFam Ubiquitin carboxyl-terminal hydrolase 148 257 - -
Eupl02g00176 820 FunFam Ubiquitin carboxyl-terminal hydrolase 5 102 - -
Eupl02g00176 820 SUPERFAMILY UBA-like 691 736 IPR009060 GO:0005515
Eupl02g00176 820 FunFam Ubiquitin carboxyl-terminal hydrolase 627 669 - -
Eupl02g00176 820 ProSiteProfiles Zinc finger UBP-type profile. 160 270 IPR001607 GO:0008270
Eupl02g00176 820 SUPERFAMILY RING/U-box 163 270 - -
Eupl02g00176 820 MobiDBLite consensus disorder prediction 379 401 - -
Eupl02g00176 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 107 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00176 Eupl-Chr2 2029820 2053817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00176 627 677 C2H2 Transcription Factor Family AT1G04850 37.255 3.16e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00176 K11836 - nnu:104605724 1416.75