Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00175 ATGGTGAGAACCCCCTGCTGTGAGAAAACAGGACTGAAGAGAGGGGCATGGACTCCTGAAGAAGATAAGAAGTTGACAGCTTACATTAAGAGATACGGCCATTGGAACTGGCGTGAGCTTCCAAAGTTTGCTGGTTTATCAAGATGTGGGAAGAGTTGTAGGCTCCGATGGATGAATTATCTGCGGCCGAATATTAAACGAGGGAATTACAGCAGAGAAGAGGAGGAACTCATCATCAATTTGCAAGAAACACTCGGAAATAGATGGTCTGCAATTGCGGCGAACTTACCGGGAAGAACAGATAATGAAATAAAAAACCACTGGCATACACATCTAAAGAAACGCTTGAAACAAAATCAGACGGGGTCGGAGGAGGAGAAACTGCACTCCAAGAAAATATCCAAATGTGAAGCTAACTGGGAGAAAAGATCAAAATCAAATAGCAATATTGCCAATGGTGCAACACCCCCAATTTTAGAAAGCTCCAGCTTCGTCGTCGTCCCGTTGTCACCGGAGCAGTCTTCTAGTGATTCCTCCTCGTCGATAATTGATTCGGTTGAAATTGACGAAAACAAAGTTACAGAAACGAATATCAATTCATCGGAAACACTTGTAGATTTCAATCAGAATTTCTGGACTGAGCCTTTTTTGGTTGGTGATTCATTCATGCTAGAGGATATTTCGGAAACCTTGCCTGACCCTGGATTTCATTTTCCTCTTTCTTTGGTGTCCCTCGGAGAATCCTTGTGTTCATATGGTTCCGACAATGCCGACGGCATGGATTTTTTTTTCAACCACTTGATGGCAGAAGAACTTCTCGAAATATGA 828 0.4287 MVRTPCCEKTGLKRGAWTPEEDKKLTAYIKRYGHWNWRELPKFAGLSRCGKSCRLRWMNYLRPNIKRGNYSREEEELIINLQETLGNRWSAIAANLPGRTDNEIKNHWHTHLKKRLKQNQTGSEEEKLHSKKISKCEANWEKRSKSNSNIANGATPPILESSSFVVVPLSPEQSSSDSSSSIIDSVEIDENKVTETNINSSETLVDFNQNFWTEPFLVGDSFMLEDISETLPDPGFHFPLSLVSLGESLCSYGSDNADGMDFFFNHLMAEELLEI* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00175 275 SMART sant 66 114 IPR001005 -
Eupl02g00175 275 SMART sant 13 63 IPR001005 -
Eupl02g00175 275 CDD SANT 69 112 IPR001005 -
Eupl02g00175 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Eupl02g00175 275 CDD SANT 16 61 IPR001005 -
Eupl02g00175 275 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 198 - -
Eupl02g00175 275 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Eupl02g00175 275 FunFam MYB-related transcription factor 13 66 - -
Eupl02g00175 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Eupl02g00175 275 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl02g00175 275 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Eupl02g00175 275 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Eupl02g00175 275 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl02g00175 275 Gene3D - 68 147 - -
Eupl02g00175 275 Gene3D - 7 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00175 Eupl-Chr2 2023439 2025888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00175 1 274 MYB Transcription Factor Family AT2G31180 42.754 1.34e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl02g00175 Myb_DNA-binding 5.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00175 K09422 - qsu:112001589 278.485