LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl02g00134	ATGAACGATCTAATCTCGAATTCATTCAAGAAGTACACAGATCTGAAGCAACAGGCCTACCTTGATGACATGGAGGCAGGGAGGGAGAGCGTGAACCTCGATAAATTCTTCGAGGATGTGGAGAGCGTCAAAGAGGACATGAGGGTGGTCGAGAAGCTCTACAAGAAGTTACAGGATTCCAACGAGGAGAGTAAGATCGTTCACAATGCCAAGACCATGAAGGAGCTCAGAGCCCGGATGGATGCTGACGTCGAGCAGGTGTTGAAACGGGTGAAAGTCATCAAGAAGAAGCTTGAGGCGCTTGAGCGCTCCAATGCAGCACACAGGAACCTTCCTGGGTGTGGGCCAGGGTCCTCTGCTGATCGCACTCGGACATCTGTGGTGGGTGGGCTGGGAAAGAAGCTCAAAGACCTGATGGATGACTTTCAGGGGTTGCGAGCCAAGATGACAGCCGAGTATAAGGAGACCGTGGAGCGTAGGTACTTCACTATCACGGGGGAGAACGCAGATGAACAGACGATTGAGAATTTGATATCAAGTGGGGAGAGCGAGACATTCCTACAAAAAGCCATCCAGGAACAAGGGCGGGGCCAGATTCTGGACACCATCTCGGAAATCCAAGAGCGCCATGATGCTGTCAAGGAGATCGAAAAGAACCTGATTGAGCTCCACCAGGTGTTCCTAGACATGGCCACCCTGGTGGATGCCCAGGGCCAGCAGCTCAATGACATCGAGAGTCACGTGGCCCATGCTAACTCATTCGTACAGCGAGGAACCGACCAGCTTCAGGTGGCCAAGGAGTACCAAAAGAGCTCAAGGAAGTGGACGTGCATCGCCATAGGTCTCGGTGCTGTTGTCATCATTGTCCTCATCTTGCCAATTCTATCAACCCTTATGCATTAG	903	0.5194	MNDLISNSFKKYTDLKQQAYLDDMEAGRESVNLDKFFEDVESVKEDMRVVEKLYKKLQDSNEESKIVHNAKTMKELRARMDADVEQVLKRVKVIKKKLEALERSNAAHRNLPGCGPGSSADRTRTSVVGGLGKKLKDLMDDFQGLRAKMTAEYKETVERRYFTITGENADEQTIENLISSGESETFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLIELHQVFLDMATLVDAQGQQLNDIESHVAHANSFVQRGTDQLQVAKEYQKSSRKWTCIAIGLGAVVIIVLILPILSTLMH*	301

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl02g00134	300	ProSitePatterns	Syntaxin / epimorphin family signature.	209	248	IPR006012	GO:0005484\|GO:0006886\|GO:0016020
	Eupl02g00134	300	SMART	SynN_4	28	154	IPR006011	GO:0016020
	Eupl02g00134	300	Coils	Coil	84	111	-	-
	Eupl02g00134	300	CDD	SNARE_syntaxin1-like	202	263	-	-
	Eupl02g00134	300	Pfam	SNARE domain	240	291	IPR000727	-
	Eupl02g00134	300	Gene3D	-	33	160	-	-
	Eupl02g00134	300	Pfam	Syntaxin	35	238	IPR006011	GO:0016020
	Eupl02g00134	300	Coils	Coil	40	60	-	-
	Eupl02g00134	300	FunFam	Syntaxin 132	196	296	-	-
	Eupl02g00134	300	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	203	265	IPR000727	-
	Eupl02g00134	300	CDD	SynN	33	190	IPR006011	GO:0016020
	Eupl02g00134	300	Gene3D	-	196	298	-	-
	Eupl02g00134	300	FunFam	Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group	30	160	-	-
	Eupl02g00134	300	SMART	tSNARE_6	198	265	IPR000727	-
	Eupl02g00134	300	SUPERFAMILY	t-snare proteins	32	258	IPR010989	GO:0016020\|GO:0016192
	Eupl02g00134	300	PANTHER	SYNTAXIN	44	288	IPR045242	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl02g00134	Eupl-Chr2	1481620	1483678	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl02g00134	1	299	SNARE and Associated Proteins	AT1G61290	79.933	2.63e-179	495

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl02g00134	K08486		-	qsa:O6P43_012571	489.189