Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00112 ATGGTCCAAAAGGAGACAGCCAGCTTACATTGTTCTGGAGGAATTCTTGCAGACGATCAGGGACTGGGAAAGACGATATCAACAATTGCTCTTATACTTAAGGAAAGGTCTCCATCTTCCAGGATGAGTTCCAGAGCTGTGAAACAAGGTGAATTGGAATCTTTAAATTTGGACGAGGATGATGGGGTTTCTGAGCTTGACGGGATGAAGAAAGATGCAGATCGTGGTCATGTTATGGTGAACGGAGGTTCAATGAAGAGTGAGAATGCTTTTATGCTAGCAAAGGGTAGGCCAGCTGCTGGAACATTGGTTGTCTGTCCTACGAGTGTCCTTCGGCAATGGGCTGATGAGCTGCATAATAAGGTCACAAGAGAAGCTAATCTCTCCGTTCTAGTATACCATGGAAGCAATCGAACGAAGGATCCCTTTGAACTGGCAAAGTATGACGTTGTCCTTACGACATATTGCATTGTAAGCATGGAGGTTCCAAAGCAACCACTTGTTGATAAAGATGATGATGAGAAAGTGAAGCCGGAAGCTCATGGTCTGCCGCCTGTGGGACTATCTTCTAGTAGAAAAAGGAAATATCCTCCAAGTTCTGATAAGAAAAGTCGGAAGGATAAGAAGGGAATGGATGGTGCATTACTTGATTCTGTTGTTCGCCCTCTTGCAAGGGTTGGATGGTTTAGGGTAGTATTGGATGAAGCCCAGAGCATTAAGAACCACAGAACTCAAGTTGCTAGGGCTTGTTGGGGACTTCGAGCTAAAAGAAGGTGGTGCTTGTCAGGGACACCTATCCAGAATGCAGTTGATGATCTCTATAGTTATTTCAGATTCCTCAGATATGATCCATATGATGTCTATAAGTCATTCTGCTCTATGATAAAGGTTCCAATAAATAGGAACCCAACCAATGGGTACAAAAAGCTACAAGCTGTCCTGAAGACAATAATGCTACGTCGCACTAAAGGCACACGTATTGATGGGGAACCAATTATTAACTTACCACCAAAATCTGTAGAACTGAAAAAGGTGGATTTCTCAAAGGAGGAACGAGACTTCTACTCCAGACTAGAGGCTGACTCACGTGCACAATTCAAGGTTTATGCTGCTGCGGGGACTGTCAAACAGAATTATGTTAACATTCTATTGATGCTCTTGCGCCTTCGACAGGCTTGTGATCACCCTCTTCTCGTTAAGGAATATGATTCTAATTCTGTTTGGAGATCCTCTGTAGAGATGGCAAAGAAACTTCCTAGAGAGAAACAGATGGGTCTTCTGGATTGTTTGGAAGCTTGTTTGGCAATTTGTGGCATATGCAATGATCCTCCTGAAGATGCGGTTGTTACAATTTGCGGTCACGTTTTCTGTAATCAATGTATATGTGAACACCTAACAGGTGATGACAACCTGTGCCCTGCAGCACAATGCAAAGTTCAACTCAGTGTAACTTCAGTGTTTTCAAGAGCCACATTAAAGAGTAGTCTATCTGATCATCCTTGTCATGATTATTCAATTGATAATTCTGGTTCTAAACATGTCGAGACACTTGAGTCGTGTTCGGAGGGTCTCTCCTCTGATTCTTCCAAAATCAAAGCTGCTCTTAAAGTCCTGCAATCACTATCCAAACCGTGGGATTGTGCCTTAGAAGATAGTTCCTTGAAATCTAGTGATGAGGTTGCCAGGTGTCCAGGAAATACGTCTGATTCTCATTCAGGGGGGTCTTTTAAGGATATGGCTGATAAAAGACAAGTTGATATGGAAAAAGGTTCAAATGATCCAAATACAAAAGTATTAGAGAAAGCAATTGTTTTCTCCCAGTGGACGAGGATGCTGGATTTGCTTGAAGCTCGTCTGAAAAGTTCTTCTATACAGTACAGGAGACTTGATGGGACTATGTCTGTTGTTGCTAGAGATAAAGCTGTGAAGGATTTTAACACCCTTCCAGAGGTTTGGTTGTGA 1962 0.4256 MVQKETASLHCSGGILADDQGLGKTISTIALILKERSPSSRMSSRAVKQGELESLNLDEDDGVSELDGMKKDADRGHVMVNGGSMKSENAFMLAKGRPAAGTLVVCPTSVLRQWADELHNKVTREANLSVLVYHGSNRTKDPFELAKYDVVLTTYCIVSMEVPKQPLVDKDDDEKVKPEAHGLPPVGLSSSRKRKYPPSSDKKSRKDKKGMDGALLDSVVRPLARVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAVDDLYSYFRFLRYDPYDVYKSFCSMIKVPINRNPTNGYKKLQAVLKTIMLRRTKGTRIDGEPIINLPPKSVELKKVDFSKEERDFYSRLEADSRAQFKVYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKEYDSNSVWRSSVEMAKKLPREKQMGLLDCLEACLAICGICNDPPEDAVVTICGHVFCNQCICEHLTGDDNLCPAAQCKVQLSVTSVFSRATLKSSLSDHPCHDYSIDNSGSKHVETLESCSEGLSSDSSKIKAALKVLQSLSKPWDCALEDSSLKSSDEVARCPGNTSDSHSGGSFKDMADKRQVDMEKGSNDPNTKVLEKAIVFSQWTRMLDLLEARLKSSSIQYRRLDGTMSVVARDKAVKDFNTLPEVWL* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00112 653 MobiDBLite consensus disorder prediction 558 578 - -
Eupl02g00112 653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 646 IPR027417 -
Eupl02g00112 653 ProSitePatterns Zinc finger RING-type signature. 452 461 IPR017907 -
Eupl02g00112 653 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 201 333 - -
Eupl02g00112 653 MobiDBLite consensus disorder prediction 168 211 - -
Eupl02g00112 653 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 430 533 IPR013083 -
Eupl02g00112 653 CDD DEXDc_SHPRH-like 3 321 - -
Eupl02g00112 653 Gene3D - 200 331 IPR038718 -
Eupl02g00112 653 ProSiteProfiles Zinc finger RING-type profile. 437 476 IPR001841 -
Eupl02g00112 653 Pfam SNF2-related domain 10 398 IPR000330 GO:0005524|GO:0140658
Eupl02g00112 653 Gene3D - 1 48 IPR038718 -
Eupl02g00112 653 Pfam Zinc finger, C3HC4 type (RING finger) 437 473 IPR018957 GO:0046872
Eupl02g00112 653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 321 IPR027417 -
Eupl02g00112 653 CDD SF2_C_SNF 600 651 - -
Eupl02g00112 653 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1 651 - -
Eupl02g00112 653 SMART ultradead3 2 300 IPR014001 -
Eupl02g00112 653 SUPERFAMILY RING/U-box 436 498 - -
Eupl02g00112 653 SMART ring_2 437 475 IPR001841 -
Eupl02g00112 653 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 84 171 - -
Eupl02g00112 653 Gene3D - 84 182 IPR038718 -
Eupl02g00112 653 MobiDBLite consensus disorder prediction 195 211 - -
Eupl02g00112 653 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 5 283 IPR014001 -
Eupl02g00112 653 Gene3D - 578 652 IPR027417 -
Eupl02g00112 653 MobiDBLite consensus disorder prediction 559 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00112 Eupl-Chr2 1242505 1247537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00112 1 651 RAD5 or RAD16-like Gene Family AT1G61140 59.970 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl02g00112 SNF2_N 7.5e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00112 - - ming:122093520 998.808