Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00081 ATGTACCTTGTTTCCATGCGAAAATCTTTCAAGGATTCTCTGAAAGTTCTTGAAGCCGATATTCAGCACGCCAATACACTGGCGTCAGATTTTCCAAGGGACTATGATGGTGCCTGCCTTCAGATGCGAATGTCATACAGCCCTGCCGCACACTTATTCCTTTTTCTAGTACAATGGACAGACTGCCACCTTGCGGGTGCCCTTGGATTGCTCAGAATCCTAATTTACAAGGTTTATGTGGATGGCACAACAACGATGTCAATCCATGAGAGAAAAGCAAGTATTAGAGAATTCTATGCTGTTATTTTCCCCTCTTTACTGCAGCTTCCAAATGGCATTACTGATATGGAAGATAAAAAGCAGAAGGCAGTATGTATGGAAAGGTACAGAAGAAGAGATGATGAAGAGCGTAGACAGTTTTCAGAGGTGGATGTTGAAAGAGAAGAAGAATGTGGGATTTGCATGGAGATGAACAGCAAGATTGTGTTGCCCAACTGCAACCATGCCATGTGCATGAGGTGCTATCGTGAATGGCATTCGAGATCCAAGTCCTGCCCCTTCTGCCGCGACAGTCTCAAGAGGGTGAACTCAGGTGATCTATGGGTCTTTACTGACAGCAGGGACGTAGTCGACATGGCAACACTGACGAGGGAGAACCTTAGGAGACTCTTCATGTACATAGATAAGTTGCCTCAGATCATCCCGGATACTGTTTTTGAAACCTACGATTCTCACGTAAAATAG 744 0.4476 MYLVSMRKSFKDSLKVLEADIQHANTLASDFPRDYDGACLQMRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSIHERKASIREFYAVIFPSLLQLPNGITDMEDKKQKAVCMERYRRRDDEERRQFSEVDVEREEECGICMEMNSKIVLPNCNHAMCMRCYREWHSRSKSCPFCRDSLKRVNSGDLWVFTDSRDVVDMATLTRENLRRLFMYIDKLPQIIPDTVFETYDSHVK* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00081 247 PANTHER RING FINGER PROTEIN 41, 151 8 244 - -
Eupl02g00081 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 213 IPR013083 -
Eupl02g00081 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Eupl02g00081 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Eupl02g00081 247 FunFam RING/U-box superfamily protein 129 198 - -
Eupl02g00081 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Eupl02g00081 247 SUPERFAMILY RING/U-box 136 194 - -
Eupl02g00081 247 SMART ring_2 151 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00081 Eupl-Chr2 861822 867376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00081 151 206 C3H Transcription Factor Family AT5G01960 37.500 5.66e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00081 K25840 - nnu:104586431 464.151