Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00039 ATGGCGGGGAGATCGTGGTTTGGTTCTTCAGCGAACGCTCCGTTCAACATGATCGTCACCAACACACCAGCTGCAGATCTGGCGCTAACGAATTTCGCTTATTGCTCTGCTTCTGATCTCAGCAAGTTCGCGGTTCCTGGATCGAATCTCGCTCTTGCATCAGTGGGCGATTCGTTCGTTCTATCTCTCTGTGCTCACGGAAGCCTACGTGATGGTCTTATTGGCCTGAATGCCATACAACGTCGACATGCAAAAGTTTCTAGTGGCGACACAATAACTGTGAGCAGATATATCCCGCCTGATAATTTCAACTTGGCGTTGCTTACACTAGAGTTGGAGTTTGTGAAAAAAGGGACTAAAAGTGAACAGATTGATGCCGTTCTTCTGGCTCAGCAACTTCGAAAGAGATTTCTTAACCAGGTTATGACAGCAGGACAAAGGGTTTCGTTTGAATATCACGGTACCAACTACATCTTTACAGTCAATCAGGCTGCCGTAGAGGGGCAGGAAAAATCTAACACCCTTGAGAGAGGGATGATATCGAGTGAAACGTACTTTGTGTTCGAAGCATCGAATGCCAGTGGTATCAAGATTGTCAACCAGCGTGAAGCCACCAGCAGCAACATTTTTAGGCAGAAAGAGTTTAATCTTCAGTCACTGGGTATAGGTGGTCTAAGTGCAGAGTTTGCTGATATATTTCGAAGAGCATTTGCCTCTCGAGTTTTCCCTCCCCATGTGACCAATAAATTGGGCATCAAGCATGTCAAGGGAATGCTGCTATTTGGACCTCCCGGGACTGGCAAGACTCTTATGGCTCGACAGATTGGGAAAATGTTAAACGGAAGGGAACCAAAGATTGTTAATGGGCCCGAAGTGTTGAGCAAGTTTGTTGGAGAAACTGAAAAGAATGTCAGGGATCTATTTGCTGATGCTGAGAATGACCAAAGGACTCGAGGGGATCAAAGTGACTTGCATGTTATTATTTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGATCAACTAGAGATGGTACTGGAGTTCATGACAGCATCGTGAACCAGCTCCTTACGAAGATAGATGGCGTGGAGTCTTTGAATAATGTTTTGCTGATAGGAATGACTAACAGGAAGGATTTGCTTGATGAAGCCCTTTTGAGGCCTGGACGCTTGGAAGTTCAGGTTGAGATAAGCCTCCCTGATGAAAATGGTCGTCTACAAATTCTTCAAATTCATACGAACAAGATGAAAGAGAACTCTTTTATTGCTCCAGATGTGAGCCTTCAAGAGCTCGCTGCCCGGACAAAGAACTACAGTGGAGCCGAACTTGAAGGTGTTGTAAAAAGTGCAGTATCATTTGCCTTGAACCGGCAACTAAGCCTAGATGATCTTACTAAGCCAGTGGACGAGGAGAGTATAAAAGTTACCATGGATGACTTTCTGCATGCACTTCAAGAAATTATTCCTGCATTTGGAGCCTCCACAGACAACCTTGAGCGATGCAGGCTTAATGGCATGGTGGACTGTGGTGAACGGCATAAGCACATCTATCAAAGAGCAATGCTACTAGTGGAGCAGGTTAAAGTTAGCAAAGGAAGTCCAATTGTTACTTGCCTTTTGGAAGGCCCTAGTGGCAGTGGTAAGAGTGCAATGGCAGCTACAGTGGGTATTGACAGTGATTTTCCCTATGTCAAGATAATTTCGGCAGAGACAATGATTGGTCTTAGTGAAAGCAGTAAATGTGCACAGATTGTCAAGGTATTTGAGGATGCATACAAGTCACAGTTAAGCATCATCATCCTTGACGACATTGAAAGGTTATTGGAGTATGTTGCGATTGGACCACGTTTTTCAAATATAATTTCCCAGACATTGTTGGTCCTCCTCAAACGACTTCCTCCAAAGGGGAAAAACATTCTGGTGTTTGGGACAACCAGTGAGGTGGGCTTCCTGGAGTCACTTGGTATCTGTGATGCTTTTTCTGTCACTTACCATGTTCCAACATTGGGAACTGCAGATGCTAAAAAGGTTTTAGAAAAGCTAAACGTTTTTGCTGAAGACGATATTGAAGCGGCCGCAGGGGCCCTGAATGACATGCCGATCAAGAAGCTCTACATGTTAATTGAAATGGCCGCCCAGGGGGAGCGGGGCGTGTCTGCAGAGGCTATTTACTCTGGTAAAGAGAGGATCAGCATCGCACATTTCTTTGACTGCCTTGGTGACATTGTCCGCTGA 2235 0.4492 MAGRSWFGSSANAPFNMIVTNTPAADLALTNFAYCSASDLSKFAVPGSNLALASVGDSFVLSLCAHGSLRDGLIGLNAIQRRHAKVSSGDTITVSRYIPPDNFNLALLTLELEFVKKGTKSEQIDAVLLAQQLRKRFLNQVMTAGQRVSFEYHGTNYIFTVNQAAVEGQEKSNTLERGMISSETYFVFEASNASGIKIVNQREATSSNIFRQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTNKLGIKHVKGMLLFGPPGTGKTLMARQIGKMLNGREPKIVNGPEVLSKFVGETEKNVRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFIAPDVSLQELAARTKNYSGAELEGVVKSAVSFALNRQLSLDDLTKPVDEESIKVTMDDFLHALQEIIPAFGASTDNLERCRLNGMVDCGERHKHIYQRAMLLVEQVKVSKGSPIVTCLLEGPSGSGKSAMAATVGIDSDFPYVKIISAETMIGLSESSKCAQIVKVFEDAYKSQLSIIILDDIERLLEYVAIGPRFSNIISQTLLVLLKRLPPKGKNILVFGTTSEVGFLESLGICDAFSVTYHVPTLGTADAKKVLEKLNVFAEDDIEAAAGALNDMPIKKLYMLIEMAAQGERGVSAEAIYSGKERISIAHFFDCLGDIVR* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00039 744 Pfam ATPase family associated with various cellular activities (AAA) 539 650 IPR003959 GO:0005524|GO:0016887
Eupl02g00039 744 Pfam ATPase family associated with various cellular activities (AAA) 258 398 IPR003959 GO:0005524|GO:0016887
Eupl02g00039 744 CDD RecA-like_NSF-SEC18_r1-like 221 397 - -
Eupl02g00039 744 SUPERFAMILY Cdc48 domain 2-like 100 203 IPR029067 -
Eupl02g00039 744 Pfam AAA+ lid domain 425 480 IPR041569 -
Eupl02g00039 744 ProSitePatterns AAA-protein family signature. 369 387 IPR003960 GO:0005524|GO:0016887
Eupl02g00039 744 Gene3D - 496 667 IPR027417 -
Eupl02g00039 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 743 IPR027417 -
Eupl02g00039 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 497 IPR027417 -
Eupl02g00039 744 FunFam Vesicle-fusing ATPase 400 487 - -
Eupl02g00039 744 SMART AAA_5 254 401 IPR003593 GO:0016887
Eupl02g00039 744 SMART AAA_5 534 654 IPR003593 GO:0016887
Eupl02g00039 744 Pfam Cell division protein 48 (CDC48), domain 2 123 168 IPR004201 -
Eupl02g00039 744 FunFam Vesicular-fusion ATPase SEC18 210 400 - -
Eupl02g00039 744 Gene3D - 15 97 - -
Eupl02g00039 744 SMART CDC48_N_2 16 99 IPR003338 -
Eupl02g00039 744 Gene3D - 400 487 - -
Eupl02g00039 744 FunFam Vesicle-fusing ATPase 101 198 - -
Eupl02g00039 744 SUPERFAMILY ADC-like 14 97 IPR009010 -
Eupl02g00039 744 FunFam vesicle-fusing ATPase isoform X1 496 667 - -
Eupl02g00039 744 Gene3D - 207 399 IPR027417 -
Eupl02g00039 744 PANTHER VESICULAR-FUSION PROTEIN NSF 15 743 IPR039812 GO:0016887|GO:0035494
Eupl02g00039 744 Gene3D - 101 198 - -
Eupl02g00039 744 FunFam Vesicle-fusing ATPase protein 15 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00039 Eupl-Chr2 470629 488703 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00039 249 465 Calmodulin-binding Proteins AT3G56690 39.367 3.77e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00039 K06027 - psom:113318184 1300.8