Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00023 ATGTTTACAGGCAATTCGGAGTTGAATTCTGTATCAGAAACGTGTTCTGATATGAGGAAGACAAGAGGAGGTTCTTTCATATCGGATTTAATTGTTGGTCTCTGTCTTGTTTTTGCTTTGTTTCGGCCGGTTTCGGCTGTGAGACCTCTCAGGGAGAGGGCTCGGTCGTGGGGCGACGAGTGGCTATTTATTAGAAGAGATGAGAATGACCTTGGCCCATATTCTACTTGGAACATAACAGGAACCTATAGAGGCACTTGGAACTTCCTAGACTCCACCAATAGCTCTTCCAGATTTCCAGATTTCGGGAAATCTAACGGCATTTCTGTCCTTGAATTAATGAGTACTTCGACAAAGATAACTGGTGTACATTACGTTCAGGGAGTAATAATTTTCCACGATGTGTTTGACAATGAACGTGATGTTGGAGCTGCTCAAATGAGGGTAGAAGGTGTATATATATGGCCATTTAGACAACTTCGAATGGTAGCCAGCAGTGGAAAAGACGGAGAGCTGGGCCAAGAAGATGATTACATTTTATCCAATCCTTATCACTTGCTTGGAGTTTTCTCATCTCAAGTGTTTCAAGAGTCTCCCCGAGATAAGATTTGGAAGAGGAAAAACTCACCTACCTATGACATGGAGAAACATTGTAATTTAGAAATTGCAGCTCAAATTTCACGTGTCTCATCCACTCAAAATGATGGAGATCGTGAAAATTATCATTTGGAAGGATTGATGGAGAGTCCTTCTGCGGATGATGATGGAGAGTGCTTCTCGCCCATAGTATTAAATGCTACTTCTGTCAACATTGAGGTTTACTACAACAAAGCAGTTAACTATACCTTGATGGTCACCTTTATCTCTTTCCTTCAAGTTCTTCTGTTAATTCGACAAATGGAACACAGCAATACTCAATCTGGAGCAGCTAAAGTTTCAATTTTAATGATTGGGCAACAAGCAATCATGGATGCTTATCTTTGTCTTCTACATCTAACTGCGGGGATATTAGTTGAATCCCTGTTTAATGCTTTTGCAACAGCTGCCTTTTTCAAGTTCGTTGTCTTCTCCATTTTTGAGATGAGATATCTTCTTGCCATATGGAAAGCAAGTAGGCCTATGATTAACGGAGAAGGTTGGGAGACATTGAGACGTGAGCTATCAGTTCTTTACAGTCGCTTTTATGGGATTCTTTTGGGAGGCATTCTAGTCATGTACGAGTTTCATAATTTTCTGCGGCCTATTCTTCTCATTATGTACTGCTTTTGGATCCCTCAAATAGTGACCAATGTTGTACGTGATTCAAGAAAACCACTACATCCTTATTACATATTAGGCATGACTGTCACTCGGCTAGCAATCCCGTTATATGTCTTTGGTTGCCCATACAACTTCATGCGCATCGAGCAAGACAAGAATTGGTGTATCTGTTTGGGGGTATTCCTGGGACTTCAAGCATCGATTCTTCTTCTGCAGCATTATCTTGGATCTCGGTGGTTCATTCCTCGTCAGATCCTTCCAGAGAAATATAGCTACTATAGAAGATTCAACCATGATGCAAGTCATTCTACTGATTGCGTCATTTGCATGACTGGCATCGATCTCACACAATGGTCCAATGACTGCATGGTGACACCATGTGATCATTTCTTTCATTCTGGTTGCTTACAAAGGTGGATGGATATAAAGATGGAATGCCCAACTTGCCGGCGTCCCCTGCCACCAGCCTAA 1731 0.4159 MFTGNSELNSVSETCSDMRKTRGGSFISDLIVGLCLVFALFRPVSAVRPLRERARSWGDEWLFIRRDENDLGPYSTWNITGTYRGTWNFLDSTNSSSRFPDFGKSNGISVLELMSTSTKITGVHYVQGVIIFHDVFDNERDVGAAQMRVEGVYIWPFRQLRMVASSGKDGELGQEDDYILSNPYHLLGVFSSQVFQESPRDKIWKRKNSPTYDMEKHCNLEIAAQISRVSSTQNDGDRENYHLEGLMESPSADDDGECFSPIVLNATSVNIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMINGEGWETLRRELSVLYSRFYGILLGGILVMYEFHNFLRPILLIMYCFWIPQIVTNVVRDSRKPLHPYYILGMTVTRLAIPLYVFGCPYNFMRIEQDKNWCICLGVFLGLQASILLLQHYLGSRWFIPRQILPEKYSYYRRFNHDASHSTDCVICMTGIDLTQWSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00023 576 SUPERFAMILY RING/U-box 506 575 - -
Eupl02g00023 576 PANTHER RING ZINC FINGER PROTEIN 117 575 - -
Eupl02g00023 576 SMART ring_2 526 569 IPR001841 -
Eupl02g00023 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 576 IPR013083 -
Eupl02g00023 576 ProSiteProfiles Zinc finger RING-type profile. 526 570 IPR001841 -
Eupl02g00023 576 SMART ringv_2 525 570 IPR011016 GO:0008270
Eupl02g00023 576 FunFam E3 ubiquitin-protein ligase, putative 512 576 - -
Eupl02g00023 576 Pfam Ring finger domain 525 570 IPR001841 -
Eupl02g00023 576 CDD RING-H2_TUL1-like 520 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00023 Eupl-Chr2 326897 351005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00023 523 574 C3H Transcription Factor Family AT1G53010 37.736 3.55e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00023 K23788 - tcc:18608733 997.267