Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00021 ATGGATACTAGAATTGATAACAGTAGGTTCGGAGCCAAGGGGGGGAGCTCGAAGGAGAAGACCAAGAAGGAAGTGGCGGTGGAGGACGATGCCGAAGAGGACGAAGAAGAGCTAGGCTTAGGGTTTGGTGACGTTGAAAAGAAGAAGAAGGCCGTGGTTAAGAGAGGTTTGGGCGGCGGGGGAGGGGTTTCGCCGCCGTGCTGTCAGGCGGAGAAGTGCACGACTGATCTCACCGACGCCAAGCGCTACCATCGACGCCATAAGGTCTGCGAGCATCACTCCAAGGCTCCTTTTGTGATTGTCTCTGGAATCCGCCAGAGGTTCTGCCAGCAATGCAGCAGGTTCCATGAGCTATCAGAGTTTGACGAAGCAAAGAGGAGTTGCCGTAGGCGTTTGGCTGGACACAATGAGCGGCGCAGGAAGAACTCTTCTGAATCTCATGGAGAAGGCTCAAGCCGCAAAGGAGAGAGCCCTCAGTTGAAGGAAAATCATTGCAGGCAGGCTGACCAAAGTGGGAGGATGACAATAACCCTCCCAGGAAGTGCCAAACATTTCCAGATCAGATAA 567 0.5362 MDTRIDNSRFGAKGGSSKEKTKKEVAVEDDAEEDEEELGLGFGDVEKKKKAVVKRGLGGGGGVSPPCCQAEKCTTDLTDAKRYHRRHKVCEHHSKAPFVIVSGIRQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKNSSESHGEGSSRKGESPQLKENHCRQADQSGRMTITLPGSAKHFQIR* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00021 188 MobiDBLite consensus disorder prediction 138 168 - -
Eupl02g00021 188 MobiDBLite consensus disorder prediction 1 27 - -
Eupl02g00021 188 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 22 157 IPR044817 GO:0003677
Eupl02g00021 188 Pfam SBP domain 68 141 IPR004333 GO:0003677
Eupl02g00021 188 SUPERFAMILY SBT domain 65 145 IPR036893 GO:0003677|GO:0005634
Eupl02g00021 188 FunFam Squamosa promoter-binding-like protein 14 60 129 - -
Eupl02g00021 188 Gene3D - 59 129 IPR036893 GO:0003677|GO:0005634
Eupl02g00021 188 ProSiteProfiles Zinc finger SBP-type profile. 65 142 IPR004333 GO:0003677
Eupl02g00021 188 MobiDBLite consensus disorder prediction 132 188 - -
Eupl02g00021 188 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00021 Eupl-Chr2 311379 312756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00021 48 188 SBP-box Gene Family AT3G15270 55.862 1.16e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Eupl02g00021 SBP 6.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00021 - - nnu:104608184 239.965