Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00019 ATGCCTGCACAGAAGCGGACTTCTGAGAATATGGAGGAGGATTCTCAGCAACGCCACCACTATCAGCAGCAACAACAACATAAAAAAGCCGAAGAAGAAGATGATGAAGAAGAAGAAGGAGAAGATTCCGACGGAAGCCCTTCTTCTAGTGAAGGAGACAAAGATGAATTTGTCTCAGTAAAATTGTCAGACATACGCAAAGAAGTGCAATGCCCAATATGCCTAGGTATTATTCGGAAGACGAGAACTGTAATGGAATGCCTCCATCGCTTCTGCAGGGAATGCATTGACAAATCAATGAGACTGGGGAACAATGAGTGTCCTGCCTGCCGCACGCATTGTGCAAGTCGTCGTTCTTTGAGAGATGATCCAAACTATGATGCTTTAATTGCAGCCTTATGTCCCGATATTGACAAGTATGAGGAGGAGGAACTGGCTTTTCACGAAGAGGAAAAGACTCGCAATAAGCAGATCCAAGCATCTATTGCCCAGACTTTGCAACGACAATCAGAAGCACTTGTTAGGAGACGGATGCCTAAAAACACAGCAGCTGCATTTATGAGGAAATCACATGGGAATTATCGGAGAGGAAGAAGTAGAAACAGTCGAGGCACTGAACTTCAAGGATCTGATGATGATGAAGAAGGAAATGGTAATGAGGGGGGCAGAGATTCATCTTCTGCTGACGAGCGCTGCACAGATGTCAAGCAGAAAAGGTGCAAGAGATGGGCAGGACCTCGGTTCTCTCTGCCTTCTTCAGATGCTGCCAATGGAGATGGAGGCTGTGATGAAAATGATGATTTAGAAATGAGCAGAGAAAGCACAGGTGTATCTCCTGGGCTTCTTGGGAACCCCGAAGTGCTTGCTTGGGGCAAGGGTGGTGTGCGGAGTCATACACGATATGGCAGTTTAAGCAATGGAAAGAATAACCGGAGCAGCCGCCTAACAAAGTTGGTGGATTACCTTCGAAGCTTAGAGGAAAATGACGACGAGTTGGATATACATGTCACGCTGATTCCTTCAGATGAACAAAGTATACCGAGTTTGCAGCGGCCGTACCTTTGCTGCCGGCCAACGTTGTCAGTTAGACATCTATGTCAATATGTTGCTCTCCAAACTCCAGTGCAAGCTGAAGAAATTGAAATATTAGTGGTAAAAGAGCTCCATCCTACAACTGCTGATGAATGTGGGCCCATGCTCAACCCTTCAACCGTTACAGGTGATCCAGTTCACAAGGTTGCTCCTTGCAAAGATGAGCTGCAAATATTGGAAGAGCAAGAAACTCTGGCGAGGCTGCAAGCTAATTGTGCTTTTAGTCAAGGCCATCTGGTTCTGGTATATCGGCAGAAGATGTCGAGTTAG 1362 0.4611 MPAQKRTSENMEEDSQQRHHYQQQQQHKKAEEEDDEEEEGEDSDGSPSSSEGDKDEFVSVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALCPDIDKYEEEELAFHEEEKTRNKQIQASIAQTLQRQSEALVRRRMPKNTAAAFMRKSHGNYRRGRSRNSRGTELQGSDDDEEGNGNEGGRDSSSADERCTDVKQKRCKRWAGPRFSLPSSDAANGDGGCDENDDLEMSRESTGVSPGLLGNPEVLAWGKGGVRSHTRYGSLSNGKNNRSSRLTKLVDYLRSLEENDDELDIHVTLIPSDEQSIPSLQRPYLCCRPTLSVRHLCQYVALQTPVQAEEIEILVVKELHPTTADECGPMLNPSTVTGDPVHKVAPCKDELQILEEQETLARLQANCAFSQGHLVLVYRQKMSS* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00019 453 ProSiteProfiles Zinc finger RING-type profile. 71 111 IPR001841 -
Eupl02g00019 453 ProSitePatterns Zinc finger RING-type signature. 87 96 IPR017907 -
Eupl02g00019 453 MobiDBLite consensus disorder prediction 7 31 - -
Eupl02g00019 453 MobiDBLite consensus disorder prediction 169 232 - -
Eupl02g00019 453 SUPERFAMILY RING/U-box 70 125 - -
Eupl02g00019 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 141 IPR013083 -
Eupl02g00019 453 PANTHER OS11G0578200 PROTEIN 9 451 IPR044592 -
Eupl02g00019 453 MobiDBLite consensus disorder prediction 245 284 - -
Eupl02g00019 453 SMART ring_2 71 110 IPR001841 -
Eupl02g00019 453 MobiDBLite consensus disorder prediction 1 55 - -
Eupl02g00019 453 MobiDBLite consensus disorder prediction 32 46 - -
Eupl02g00019 453 CDD RING-HC_RING1-like 68 133 - -
Eupl02g00019 453 Pfam Zinc finger, C3HC4 type (RING finger) 70 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00019 Eupl-Chr2 284331 300078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00019 64 113 C3H Transcription Factor Family AT3G23060 37.255 9.62e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00019 K10695 - ming:122093841 604.364