Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl02g00004 ATGTATATAAAAAATGTCTTCATTGAAGGATTCAAGTCCTATGCCACCAGAACGGTGGTTCCTGATTTCGACCCCTTCTTTAATGCCATCTCTGGCCTTAATGGCTCGGGAAAATCTAACATCCTGGACTCCATCTGCTTTGTATTGGGAATCACAAACCTGCAACAGGTCCGGGCTTCGAATCTTCAGGAACTAGTTTACAAGCAGGGACAAGCTGGAATAACCAAAGCTACGGTTTCTGTTGTCTTTGACAATTCGGATCGGAATCGAAGTCCATTTGGTTATGAAGATAGTCGAGAAATCACAGTAACCAGACAGATTGTGGTGGGTGGAAGGAGCAAATACCTCATCAATGGACGCCTTGCCCGACCAAAGCAAGTCCAAAATCTTTTCCATTCTATGCAGCTTAATGTCAACAATCCACAATTCCTCCTAATGCAAGGGCGCATCACCAAGGTTTTGAACATGAAACCTCCCGAGATCTTATCCATGCTTGAAGAGGCCGCTGGGACAAGAATGTATGAGACAAAGAAGGAGGATGCTTTGAAGACACTTGGGAAGAAGCAGATCAAAGTTGACGAGATAGATAGGCTTCTTGACCAGGAAATACTGCCTGCTTTGGAGAAGCTGAGGAATGAAAAGATGCAGTACATGCAGTGGGCTAATGGTAACACGGAATTGAATCCTCTTAGAAGGTTCTGCATTGCTTATGAATTTGTCCAGGCGGAGAGGATAAGAGATGATGCTGTCAGTGGGCTCGAACAAATAAAAGCCAAGATTGCTGAGATTGACGATGATACAGGAAGAATGCAGATGAAGATTCAGGAAATGGAGACAAACATAACAAACTTGACTGCTGAAAAAGATGCTATCATGGGTGGGGAGGTGAAAACTTTGTCGGATAAAGTGGATGCCCTTTCTCTTGATCTTGTGAAGGAAACATCTGTGCTGAAAAATCAAGAGGATTCTCTCAGGGCCGAAAAAAAGAATTCTGAAAAGATTGCTAGAAGTATTGAAGACATTAAAAAATCTATAGAAGAGAGGGACTCAGCTGTTAAAAATGCTGAAGATGGAGCATCTGATCTGAAAAAGAGGGTTGAGGATCTATCTAAGAATTTGGAAGAGTATGAAAAAGAATACCAGGGCGTGCTAGCTGGTAAGAGCAGTGGGAATGAGGAGAAGTGTCTTGAAGATCAATTAGGTGAAGCAAAAACTGCGGTTGGCAGTGCTGAAACAGAATTGAAGCAGCTGAAAACAAAAATAAGCCATTGCGAGAAAGAGCTGAAAGAGAAAAAGCAACAGTTAATGTCAAAGCGTGAAGAAGCTGTTGCTGTAGAGAATGAGCTCAATAGCAGAAGAAAAGATGTGGAAAAGGTTAAAATGGCCCTGGAATCTGTTCTCTATGAAGAGGGTCAGATGGAAGCTTTGCAAAAGGATCGGCAGACGGAGTTGGAGGTGGTGCAGAAGTTGAGGGATGAAATTCGGATTCTTTCATCACAATTGGCAAATGTTCATTTCACGTACAGTGACCCCGTGAAGAATTTTGACAAGTCAAAGGTTAAGGGTGTGGTTGCAAAGCTCATTAAAGTGAAGGATGGTTCCACAATGACTGCCGTAGAGGTTGCTGCTGGAGGCAAGTTATTTAATGTTGTTGTAGACACAGAAAATACAGGAAAGCAGCTACTTCAAAATGGTGATCTTCGAAGAAGAGTAACGATTATACCTTTGAACAAAATCCAATCCCATACTGTTCCTCCTAGGGTTCAACATACAGCTGTTAGAGTGGTTGGTAATGGAAATGCAGAATTGGCACTTTCTTTGGTTGGCTATGATGAGGAAGTGAAGAGTGCAATGGCATATGTTTTTGGTTCAACCTTTGTTTGCAGAACTGTTGATGCTGCAAAGGAGGTTGCTTTTAATAGAGAAATATCCACCCCAAGTGTTCTCTTGAAGGTGATATATTTCAGCCAAGTGGTCTCCTGA 1983 0.4226 MYIKNVFIEGFKSYATRTVVPDFDPFFNAISGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSVVFDNSDRNRSPFGYEDSREITVTRQIVVGGRSKYLINGRLARPKQVQNLFHSMQLNVNNPQFLLMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEDALKTLGKKQIKVDEIDRLLDQEILPALEKLRNEKMQYMQWANGNTELNPLRRFCIAYEFVQAERIRDDAVSGLEQIKAKIAEIDDDTGRMQMKIQEMETNITNLTAEKDAIMGGEVKTLSDKVDALSLDLVKETSVLKNQEDSLRAEKKNSEKIARSIEDIKKSIEERDSAVKNAEDGASDLKKRVEDLSKNLEEYEKEYQGVLAGKSSGNEEKCLEDQLGEAKTAVGSAETELKQLKTKISHCEKELKEKKQQLMSKREEAVAVENELNSRRKDVEKVKMALESVLYEEGQMEALQKDRQTELEVVQKLRDEIRILSSQLANVHFTYSDPVKNFDKSKVKGVVAKLIKVKDGSTMTAVEVAAGGKLFNVVVDTENTGKQLLQNGDLRRRVTIIPLNKIQSHTVPPRVQHTAVRVVGNGNAELALSLVGYDEEVKSAMAYVFGSTFVCRTVDAAKEVAFNREISTPSVLLKVIYFSQVVS* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl02g00004 660 Gene3D - 1 202 IPR027417 -
Eupl02g00004 660 Coils Coil 400 448 - -
Eupl02g00004 660 SUPERFAMILY Smc hinge domain 483 647 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Eupl02g00004 660 Gene3D - 320 451 - -
Eupl02g00004 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 381 IPR027417 -
Eupl02g00004 660 SMART SMC_hinge_2 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Eupl02g00004 660 Pfam SMC proteins Flexible Hinge Domain 519 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Eupl02g00004 660 Pfam RecF/RecN/SMC N terminal domain 2 290 IPR003395 -
Eupl02g00004 660 Coils Coil 473 493 - -
Eupl02g00004 660 FunFam Structural maintenance of chromosomes 2 1 202 - -
Eupl02g00004 660 CDD ABC_SMC2_euk 1 156 IPR027120 GO:0005524|GO:0016887
Eupl02g00004 660 Coils Coil 352 386 - -
Eupl02g00004 660 SUPERFAMILY Tropomyosin 294 493 - -
Eupl02g00004 660 Gene3D - 518 576 - -
Eupl02g00004 660 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 1 643 - -
Eupl02g00004 660 FunFam Structural maintenance of chromosomes 2 518 582 - -
Eupl02g00004 660 Gene3D - 577 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl02g00004 Eupl-Chr2 135256 141173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl02g00004 27 170 Structural Maintenance of Chromosomes family AT5G15920 24.306 7.45e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl02g00004 K06674 - nnu:104589909 1060.44