Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01941 ATGCTTTTCTTAGAATCCATCGGCATCGATCTATTTTCCATTATCGATGACTACCCTCTGATCGTCTCGTCATCCCTTGACGATATCAAATCGACAGTAGATTTCATGCGCTCCATGGGATTTACTCCACTGGAGTTCCGTCGAATATGCGGCATGTGCCCGGAGATCCTGAATTATAGGGTTTCTGACATTGCCCCCATCTTCACCTTCCTCCTACGGGAATCCAATGTCAAGGGCTCTGATCTCCGAAGAGTCATAAACCGACGGCCGAGATTGCTCACCTGCGACGTTGAGAAGCGGCTTCGTCCGACACTCTACTTCTTACAGAGGCTGGGGATATCAGAGGTCAATAAACACGCGTCATTGCTATCGTGTAGCGTGGAAGAGAAGTTCATACCGAGAATTGAGTACTTGGAGAAGATCGGGTTTTCATACCGAGATGCCATTTCAATGGTGAGGAGGTTTCCGCAGTTGTTCTGTTATAGTATTAAAGATAATTTCGAGCCAAAATTTAATTATTTTGTCATGGAGATGGGGAGGGATTTGAAGGAATTGAAGGAGTTTCCACAGTATTTCTCCTTTAGTTTAGAGAATAGGATAAAGACGAGGCACTGGTCATGCGTAGAGAAGGGCGTGTGCTTTCCCCTCCCAGTTATGTTAAAGACGAGCGAAACACAGTTCCAGGATAGATTGGAGGTTTATTGTAGTTCTTCGCCGCCGATGAGAAGTTCTCCTTTGTGGTGTACAAATTCAGATAATAATTCAATATCAAGTTAA 777 0.4453 MLFLESIGIDLFSIIDDYPLIVSSSLDDIKSTVDFMRSMGFTPLEFRRICGMCPEILNYRVSDIAPIFTFLLRESNVKGSDLRRVINRRPRLLTCDVEKRLRPTLYFLQRLGISEVNKHASLLSCSVEEKFIPRIEYLEKIGFSYRDAISMVRRFPQLFCYSIKDNFEPKFNYFVMEMGRDLKELKEFPQYFSFSLENRIKTRHWSCVEKGVCFPLPVMLKTSETQFQDRLEVYCSSSPPMRSSPLWCTNSDNNSISS* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01941 258 PANTHER CGI-12 PROTEIN-RELATED 13 231 IPR003690 GO:0003690|GO:0006355
Eupl01g01941 258 Gene3D Transcription termination factor 3, mitochondrial 62 236 IPR038538 -
Eupl01g01941 258 SMART mt_12 83 114 IPR003690 GO:0003690|GO:0006355
Eupl01g01941 258 SMART mt_12 182 213 IPR003690 GO:0003690|GO:0006355
Eupl01g01941 258 SMART mt_12 149 181 IPR003690 GO:0003690|GO:0006355
Eupl01g01941 258 SMART mt_12 12 42 IPR003690 GO:0003690|GO:0006355
Eupl01g01941 258 SMART mt_12 115 144 IPR003690 GO:0003690|GO:0006355
Eupl01g01941 258 SMART mt_12 47 78 IPR003690 GO:0003690|GO:0006355
Eupl01g01941 258 FunFam Transcription termination factor MTEF1, chloroplastic 71 235 - -
Eupl01g01941 258 Pfam mTERF 10 76 IPR003690 GO:0003690|GO:0006355
Eupl01g01941 258 Pfam mTERF 73 228 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01941 Eupl-Chr1 41458078 41458854 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Eupl01g01941 mTERF 4.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01941 K15031 K06620 vvi:100254596 417.157