Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01940 ATGTCTGGCGGCCGAGCTTCGAATCGCTCGGTGCATCCGACAGGGATGATCGTTCAATCTTTGAAGCGTCACCTTCCATTCTCGTCGACGAGACCGCCCTTCGTTTCTCCTGATGACTACCATCGGTTCTCTGGAGATAACCGTAGGCTTGCAGACGAGAAAGCTGAAGCTATTGTTGTTAAATCTCCCCAGTTGAAGCGGAAGCCTGAAACAGAAGACCATGAAGCTGAGTCTAGTGAGTGGACTACTAGTCCTAATTACGCTGAAGGGGTCAACAGTCCCCTCCGGACACCCATATCAGGAAAAGGGGGCAGGATATACAGCAGAACAAAGGTCTCCAAGTACAATAGATCCGGGCCTCAAATCCCCATAACAAATGCTGGTTCCCCTTCTGGCAATACTCTCACTCCAGTTGGTACTTGTCGTTACGATAGCTCTCTAGGTCTCTTGACAAAAAAGTTTATCAATTTGATCAAACACGCAGAAGATGGTATTCTTGACCTAAACAAAGCTGCTGACACTTTGGAGGTGCAGAAAAGGAGGATATATGACATAACAAATGTCCTGGAAGGAATTGGACTTATAGAGAAAAAGCTTAAGAACAGAATACGCTGGAAGGGACTTGATGTTTCAAGGCCGGGGGAGGTTGATGATGATGTCACTATCTTACAGGCAGAGGTTGAAAACCTTTCCATGGAGGAGCACAGATTAGATGATCGGATAAGAGAAAGGCAAGAAAGACTGAGGGACCTGAGTGAGGATGAAAACAATCAAAGGTGGCTTTTTGTGACTGAAGAAGACATTAAGGGCCTACCCTGCTTCCAGAATGAGACCCTGATAGCAATTAAAGCTCCGCATGGCACCACTCTGGAAGTCCCAGATCCTGATGAGGCTGTTGACTATCCCCAGAGGAGATATAGAATTGTCCTAAGAAGCACCATGGGTCCCATTGATGTTTACCTTGTCAGTCAATTTGAGGAGAAGTTTGAGGAGATGAATGGTGTTGAGGCACCTCTGAGCCTCCCACTGGCATCAAGTTCAGGGTCTAATGAGAACCCAGCGGCAGCAATGGTGACCAGGGAGAGTGGAGGGAAGGAGATTGAACTGCAAGGACAAGATGCTAATAGAATGTGCTCAGACCTTAATGCCTCTCAGGACTTTGTGGGTGGAATCATGAAGATTGTCCCCTCAGACGTCGATGTAAGTGCACTAACCTCAGTTGTAAGGATTAATCATGGCATTAGCAGAGTTATGAAGATACGATCTGATGAGTAA 1275 0.4667 MSGGRASNRSVHPTGMIVQSLKRHLPFSSTRPPFVSPDDYHRFSGDNRRLADEKAEAIVVKSPQLKRKPETEDHEAESSEWTTSPNYAEGVNSPLRTPISGKGGRIYSRTKVSKYNRSGPQIPITNAGSPSGNTLTPVGTCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDVSRPGEVDDDVTILQAEVENLSMEEHRLDDRIRERQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEMNGVEAPLSLPLASSSGSNENPAAAMVTRESGGKEIELQGQDANRMCSDLNASQDFVGGIMKIVPSDVDVSALTSVVRINHGISRVMKIRSDE* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01940 424 PANTHER TRANSCRIPTION FACTOR E2F 67 403 IPR015633 GO:0000978|GO:0006357
Eupl01g01940 424 Pfam E2F/DP family winged-helix DNA-binding domain 144 207 IPR003316 GO:0005667|GO:0006355
Eupl01g01940 424 Coils Coil 234 254 - -
Eupl01g01940 424 MobiDBLite consensus disorder prediction 41 79 - -
Eupl01g01940 424 SMART E2F_TDP_2 142 207 IPR003316 GO:0005667|GO:0006355
Eupl01g01940 424 MobiDBLite consensus disorder prediction 23 103 - -
Eupl01g01940 424 SUPERFAMILY E2F-DP heterodimerization region 219 324 IPR037241 -
Eupl01g01940 424 CDD E2F_DD 218 324 IPR032198 GO:0046983
Eupl01g01940 424 SUPERFAMILY "Winged helix" DNA-binding domain 142 205 IPR036390 -
Eupl01g01940 424 Pfam E2F transcription factor CC-MB domain 223 323 IPR032198 GO:0046983
Eupl01g01940 424 FunFam E2F transcription factor 1 136 209 - -
Eupl01g01940 424 Gene3D - 137 209 IPR036388 -
Eupl01g01940 424 Gene3D - 214 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01940 Eupl-Chr1 41423810 41441361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01940 17 400 E2F-DP Transcription Factor Family AT2G36010 58.394 1.65e-148 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Eupl01g01940 E2F_CC-MB 2.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01940 K06620 - nnu:104589827 685.256