Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01929 ATGCTTATCCGTCTGAGCAAGGTTTCATCTTTGGAAGGCGAGGGAGGGGCAAAGCCCTTACCAGTGGAAACCGTGACAGTGGCGTGCCCCGACCACCTCGTTCTTGCTGATCTCCCTGTCGCCAAGAGCATTGGCACTGCTAGCACCGCTTTCCTTGTCAAGACCGTTGGCCGCAGGTCCCGTCGCCAGCTTGGTGAGCGAGTCCATTTCTGCGTCCGCTGTGATTTCCCCATTGCCATCTACGGCCGCTTGAGCCCTTGTGAGCATGCCTTCTGTCTGGACTGTGCTAGGAGTGATTCTAGCTGCTATCTATGTGATGAGCGCATTCAGAAGATTCAGACTATTAAAATGATGGAGGGGATATTGATATGTGCAGCCCCACATTGTCTCAAGTCCTTCCTAAAGAGGTCTCAATTTGAATCTCATATTCATGAGAGTCATGCCGACCTTCTTCAACCCAATATGGAGCGAGAAGATGGGAATGAGTCGGATGCTTTCAATGTGACAAGGCCCTCCTCCGTGGATCCACATTGTAAACAATCCATACCTCCAGATTCTTCAACTGCCCGTGCTCTGTCGAGGGCCGGTTTCTCACCCAATTCAAATTCGCAGCCCCAAGATCGTGAAGACAAAGCTCGTTGCCACCAACCCAGAGAACATCCACCTCCCAAGCCAATTATACAGCCACAGCCACCACCATTTTACGGCCAACACCAAAACCATCCTTCGGATATGCAGTCCGATAACAATCCACCCCAAGGCTTTGACAGGCCAGGTCCCTACAACCGCTTCCATCCTCAGCACAGCCTTGACACACAGGGTGGCCCACATAATCGGCGAGATTCTGACCAGTTTCCAGACAAGCAGCAAGGAGTTCTATCGGAATCTCCATTCCCTGACTACCCCCCTCTGCATACCCATCAGCCACCTAATTTCTTGGTGCCAGTAATTGCAAATCAAGGGCTGACTCCCCGTCCTCCATTCAGCTATCCTCCATTTCCAGCCGAGGGAGCTCAACCATTCTACAGTGCACATTATGAGATGGCGCGACAAGATTTGGCAACGGAAGGTGGATCAGAACAGGGTTCATTGTTGGGTTTTCCACCAGCTCCAGCTGCAGGCATGAGTTTCCCAGACAGTTATCCTCGGCCATGGAATGCCGGACTTACAGGTGTCCCTTTTGAACAAATGTCTGGTGGTCAAGGAGTTCCAGAAGGTTATGGAAACCTGTCAGATTCTCAAGGAAGACTTGCATTCTTCCAAGGTGATTATGGACGTGTCCCAGGAGGTTTGCTTCAGAATCCTCCTCCTCTGCCTCCGCCTCTGGGCAATAAGGGGTTGGAACCTCTGCAAGGTGCCAACGCTTCAGACCACAAGGAGGGCAAGGGTGTGCTTGCACCATTACCGCTGCCACCACCTCCACCTCCACCTCATCTGTCACAGTTCAAACGGGGGAAGTTCTCCAATTCAGGTGATATGGGTCGAGAGGGACAGGGCTATGGGTGGCAAAATGAGAAGCGAGATGGCTTTGGAAGTGGCCATGACTAG 1548 0.5207 MLIRLSKVSSLEGEGGAKPLPVETVTVACPDHLVLADLPVAKSIGTASTAFLVKTVGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSSCYLCDERIQKIQTIKMMEGILICAAPHCLKSFLKRSQFESHIHESHADLLQPNMEREDGNESDAFNVTRPSSVDPHCKQSIPPDSSTARALSRAGFSPNSNSQPQDREDKARCHQPREHPPPKPIIQPQPPPFYGQHQNHPSDMQSDNNPPQGFDRPGPYNRFHPQHSLDTQGGPHNRRDSDQFPDKQQGVLSESPFPDYPPLHTHQPPNFLVPVIANQGLTPRPPFSYPPFPAEGAQPFYSAHYEMARQDLATEGGSEQGSLLGFPPAPAAGMSFPDSYPRPWNAGLTGVPFEQMSGGQGVPEGYGNLSDSQGRLAFFQGDYGRVPGGLLQNPPPLPPPLGNKGLEPLQGANASDHKEGKGVLAPLPLPPPPPPPHLSQFKRGKFSNSGDMGREGQGYGWQNEKRDGFGSGHD* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01929 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 119 IPR013083 -
Eupl01g01929 515 ProSitePatterns Zinc finger RING-type signature. 87 96 IPR017907 -
Eupl01g01929 515 MobiDBLite consensus disorder prediction 206 220 - -
Eupl01g01929 515 MobiDBLite consensus disorder prediction 165 205 - -
Eupl01g01929 515 FunFam E3 ubiquitin-protein ligase Hakai 68 122 - -
Eupl01g01929 515 MobiDBLite consensus disorder prediction 237 253 - -
Eupl01g01929 515 ProSitePatterns Zinc finger C2H2 type domain signature. 124 147 IPR013087 -
Eupl01g01929 515 MobiDBLite consensus disorder prediction 429 515 - -
Eupl01g01929 515 MobiDBLite consensus disorder prediction 221 236 - -
Eupl01g01929 515 MobiDBLite consensus disorder prediction 149 307 - -
Eupl01g01929 515 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 3 504 IPR040383 GO:0016567|GO:0061630
Eupl01g01929 515 CDD RING-HC_HAKAI-like 69 118 IPR040380 -
Eupl01g01929 515 MobiDBLite consensus disorder prediction 149 164 - -
Eupl01g01929 515 MobiDBLite consensus disorder prediction 466 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01929 Eupl-Chr1 41323516 41331341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01929 1 389 C2H2 Transcription Factor Family AT5G01160 48.477 2.33e-102 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01929 K15685 - ming:122081895 733.021