Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01904 ATGAGGTCCTACGATGATAATAGGTACTCTAGCGTGTCTGATCCCGAGATTGGAGGGGTTCCGGACCCTCACAGGAACTCTTTGACGTCGGATTGTTCGGTAGAGGTAAATTTGGAAAATGGGGTTCCGGAAATTAAGGTGCATTTGGCGAAAGTGGAGAAAGATTGCAGGATTTGTCATCTTAGCTTGGAGAGTGCTAATCAGGAAGAATCTGGGATTCCTATTGAATTGGGTTGCTCCTGCAAGGATGATTTGGCCGCTGCACACAAGCAGTGCGCCGAGGCCTGGTTCAGGATAAAGGGAGACAAGACCTGCGAGATTTGTGGTTCTACTGCACGTAATGTTGTTGGTGCAAATGAGACTCACCTCGTAGAGCAGTGGAATGAGACGCTCAATGGCACGGCAACAGTGACAACTGCGCCTCCTGCAGAGACCCGAAGCTTCTGGCATGGCCACCGCTTCCTGAATTTCCTGCTAGCCTGCATGGTCTTTGCTTTTGTCATCTCTTGGCTCTTTCACTTCAACGTACCATCGTGA 537 0.4972 MRSYDDNRYSSVSDPEIGGVPDPHRNSLTSDCSVEVNLENGVPEIKVHLAKVEKDCRICHLSLESANQEESGIPIELGCSCKDDLAAAHKQCAEAWFRIKGDKTCEICGSTARNVVGANETHLVEQWNETLNGTATVTTAPPAETRSFWHGHRFLNFLLACMVFAFVISWLFHFNVPS* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01904 178 MobiDBLite consensus disorder prediction 1 26 - -
Eupl01g01904 178 SMART ringv_2 55 109 IPR011016 GO:0008270
Eupl01g01904 178 Pfam RING-variant domain 56 108 IPR011016 GO:0008270
Eupl01g01904 178 SUPERFAMILY RING/U-box 53 112 - -
Eupl01g01904 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 119 IPR013083 -
Eupl01g01904 178 ProSiteProfiles Zinc finger RING-CH-type profile. 48 115 IPR011016 GO:0008270
Eupl01g01904 178 PANTHER ZINC FINGER, RING-CH-TYPE 28 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01904 Eupl-Chr1 41082555 41093983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01904 8 178 C3H Transcription Factor Family AT5G05830 63.429 6.36e-71 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01904 - - nnu:104597049 291.967