Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01853 ATGGAGCAAGCCAGGTACTGGTCGCATGTACGTACCTCGACGAAATACACCGACTCATCATGGGAAGAACAAGCCTTTGCAGAAGACTCAGCTGGGCCTCTTGGAGGTTTTATGTGGCCTCCAAGATCTTATTCTTGTAGCTTTTGTAGAAGAGAATTCAAGTCAGCTCAAGCCCTTGGTGGCCACATGAACGTACACAGGAGGGATAGAGCTCGGCTTAACCAATCTCCAACTCCACACAACCAAGTTCAATACCCATCTCAGGTTTCCACCTTGCTCTATAATCCTAACCCTAATTCTAACACTAGGGTTCCAGACCTATCCACTCATGAGAATTGCAGTAAGCAGACCTTGGTCTCTCCTTATTCTTCTGTTATTGTTCAAAACCACCAAAAGGGATCTCTTTTTTCTTCCCCTCCGTCGTGTTCGGATGCCATAGCTGTTAGGGTTCTCACTACTGCCTCTGATTCCAACCTTGAATGGGAGAAGAATTCGAGGGAGGAAATAGAATTTCAGACTCAAGAAGATTATTTTAACAAGAGACAGAAGAGCGATGATGAGGAGGGTGTTAGTAACAAGAGACAGAAGAGCGATGCATCACCGACGTTGCCCTTCTTCCTTAAACCAGGTTCAGTTCATAAATGTCATTTCCAATCGGAGATACTTGGATTATTCCCAAGCTCCATGGAGGAGTTAGATCTTGAGCTCAGGCTTGGTAATCGGCCCAAGGTGAAGTAG 738 0.4553 MEQARYWSHVRTSTKYTDSSWEEQAFAEDSAGPLGGFMWPPRSYSCSFCRREFKSAQALGGHMNVHRRDRARLNQSPTPHNQVQYPSQVSTLLYNPNPNSNTRVPDLSTHENCSKQTLVSPYSSVIVQNHQKGSLFSSPPSCSDAIAVRVLTTASDSNLEWEKNSREEIEFQTQEDYFNKRQKSDDEEGVSNKRQKSDASPTLPFFLKPGSVHKCHFQSEILGLFPSSMEELDLELRLGNRPKVK* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01853 245 SUPERFAMILY beta-beta-alpha zinc fingers 41 71 IPR036236 -
Eupl01g01853 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Eupl01g01853 245 Gene3D Classic Zinc Finger 41 92 - -
Eupl01g01853 245 PANTHER OS07G0101800 PROTEIN 15 242 - -
Eupl01g01853 245 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Eupl01g01853 245 MobiDBLite consensus disorder prediction 176 203 - -
Eupl01g01853 245 Pfam C2H2-type zinc finger 44 68 - -
Eupl01g01853 245 SMART c2h2final6 44 66 IPR013087 -
Eupl01g01853 245 MobiDBLite consensus disorder prediction 176 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01853 Eupl-Chr1 40472600 40473337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01853 18 99 C2H2 Transcription Factor Family AT2G37740 57.143 2.41e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl01g01853 zf-C2H2_6 1.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01853 - - nnu:104601105 265.774