Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01852 ATGGAGACTGATCCCCCAAGCTTGGAAAGTTCCGATCAATTGGTCTGGACTACAGAAGACCAGGGTGGTTCAAGCCATGTTAGGTCCTATGAGTGCACCTTTTGTAAGAGAGGCTTCTCTAACGCACAGGCACTTGGAGGTCACATGAACATCCATAGAAGAGATAGGGCTAAGCTTAAACTACCTTCCAATGAGAGCCAACTTTCTTTGGATATCACAAAGAGGAATCCCTCGCAATCTCCGACGTCTCCGGACCACAACAAATCAGAAGATGGTGTTAACGTTGTTGCAAAAGATGAAAGCCATGTAGGAGAGCTCCGGCAGCTTCTAGAATCCTCGAGTAGCGAAGATCGAAAATCCGGCAGTCATGGCGGTGACCGGGTAGAGAGTAGGAAGTCATCATGGATTATTCCCGGGGTAGATGGTGTTGTTACTGCAAGGGATGAAAGCCATTTAGGAGAGCTCCGGCAGCTGCCGTTGTTTGTTGATCAGACACCATCTAACAGTGAAGGTGGTGGCCGGGAAGAGAAGAAGAAGCAGTCGAGCCATGATTTGGCCAGGGTGGAATTGGACCTAGAGCTTCGGTTGGGACCTGAGCCTCACGACACCTCGACAACGGTTCAAGAAGAATGGGGAAGCACGGTTGATAGAAACTGCGAGCGACGGCATAGATTGGTAGAAGCGTGGCATGATTTCAGCCAACAATGGCTTTTAGGTGACATTGAGCAACAGTGGCAGTGGCACGGGCAACGAGCAACAGTGGCAGTGGCATGGGCAACGAGCAACAGTGACAAAACCAAAGTGGTGGTGTTGCATACACAGACACGACGTTGTCCAGCTGTGATGATGGCGATTGATGGGGCAAAGAGGCAAGGCTACAGCATTTGGTCGTGA 894 0.5034 METDPPSLESSDQLVWTTEDQGGSSHVRSYECTFCKRGFSNAQALGGHMNIHRRDRAKLKLPSNESQLSLDITKRNPSQSPTSPDHNKSEDGVNVVAKDESHVGELRQLLESSSSEDRKSGSHGGDRVESRKSSWIIPGVDGVVTARDESHLGELRQLPLFVDQTPSNSEGGGREEKKKQSSHDLARVELDLELRLGPEPHDTSTTVQEEWGSTVDRNCERRHRLVEAWHDFSQQWLLGDIEQQWQWHGQRATVAVAWATSNSDKTKVVVLHTQTRRCPAVMMAIDGAKRQGYSIWS* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01852 297 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Eupl01g01852 297 MobiDBLite consensus disorder prediction 109 130 - -
Eupl01g01852 297 Pfam C2H2-type zinc finger 30 53 - -
Eupl01g01852 297 MobiDBLite consensus disorder prediction 170 184 - -
Eupl01g01852 297 MobiDBLite consensus disorder prediction 62 89 - -
Eupl01g01852 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Eupl01g01852 297 PANTHER OS07G0101800 PROTEIN 10 200 - -
Eupl01g01852 297 MobiDBLite consensus disorder prediction 60 92 - -
Eupl01g01852 297 SMART c2h2final6 30 52 IPR013087 -
Eupl01g01852 297 SUPERFAMILY beta-beta-alpha zinc fingers 28 56 IPR036236 -
Eupl01g01852 297 MobiDBLite consensus disorder prediction 157 184 - -
Eupl01g01852 297 Gene3D Classic Zinc Finger 10 91 - -
Eupl01g01852 297 MobiDBLite consensus disorder prediction 109 133 - -
Eupl01g01852 297 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01852 Eupl-Chr1 40463413 40465272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01852 28 60 C2H2 Transcription Factor Family AT3G09290 87.879 1.32e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl01g01852 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01852 - - nnu:104597113 162.155