Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01848 ATGCTATCTTGCGCATGCGACGACGACGTCGCCGGAGGCTTGTGGACCGTCGATAACATCCTTCAGTGCCAGAAAGTCAGCGATTTCCTCATCGCTCTCGCTTACTTCTCAATCCCTCTCGAGCTCTTCTACTTCGTTAGCTGCTCCATTATTTTCCCTTTTCGCTGGGTCCTCACTCAGTTCGGCGCGTTCATCGTTCTCTGCGGCTTGACTCACTTCGTCACTGTATGGACGTACACCTTTAACTCCTTCCACGTCATGCTAACGTTAACCGTTCTCAAATTCCTCACCGCTTTGGTATCCTGCGCCACCTCCATCACCCTCGTAACCCTAATTCCTCAGGTATTGAAAGTGATGGTGAGGGAGGGTTTGTTGATGAAGAAAACTAGAGATCTTGATCGAGAGGTAGGGTTGATGAAGAGGCAAGAGGAGGCGAGTTGGCATGTTCGGATGCTAACTCAAGAGATCCGGCGATCGCTTGATCGCCATAAGATCTTGTACACTACACTCGTTGAGCTATCTAAGGTTCTTTTCTTGGAGAATTGCGCGATTTGGATGCCGGATGGGGTTGATTCTGCGATGAATTTGACTCATGAGTTGAAGCGAAGGGACGATTTGGTTTCAATTCCTGTGGACGACCCGGAGTTGATGGAGATTGTGGGGGAACGTGGAGTTCAGATTTTGGGATTGGATTCCAGGTTGCGGCGTTTGGCAGGGCGTGGAGCAGGAGTTGCGATTCGGATGCCGATGCTTAGGGTTTCAAATTTCAAGGGCGGGACGCCGGAAATGGTGAAGGCCTGTTATGCGGTATTGGTTTTGGTTCTGCCGCAAGAGGGAAATAGGGAATGGAGCTCCCAGGAGCTTGACATTGTGGAGGTTGTGGCCGACCAGGTCGCGGTGGCACTGTCTCATGCTGCAGTTCTGGAGGAGTCTCTGTTGATGAGAGAGAAGCTCTTGGAGCAGAACATGGCTCTACAGAAAGCTAGAAAAATGGCTTTGATGGCGAATGAGGCACGGTGCTCATTTCAGAAGGTGATGAGTCGAGAGATGATCGTGCCTGGCCGCTCCATTGCGTCAATTCTCTCAGTTTTGCAGCTTGAGACTTTGAGATCAGAGCAGCAGAGGAAGATTGTTGACACCATGGCAAAGGGGAGCCTTCTTTTATCTGCTCTCATTGAGGATGCAACAGGCGTTTCGGGTTTGGGGGACAGTAGGTTAGAACTGAAATTACGTACTTTTAGCCTTCGTTCCATGCTGAAAGAGGCTGCAGGTGTATCGAAGCTTATACGTGCTTGCCGAGGACTAAATTTTGATTTCCAGGTTTCTGAAGAAGTGCCTGATCGTGTAATTGGGGATGAAACACGGATACTTCAGGCTATCTTGTATATGGTTGGAAAGGTTTCAGGTTTTGGAGCTTGTGGCACAATTGTTTTCCGTGTGTGTACTGAGGATGGGTCTCAGGGTAGCTTGGATTCTAAATACTTAACATGGAAGCAGACAATGTGTGAGGAGTTTGCTCACTTGAGATTTGAGGTGAGCAGAACCAATTCCAAAGAAGATGGCTCAAGCTTCTTGGTGCAGAAGGATGATGAGAAGTGTGGTGACGAGGCTGATAATAAAGGGCTTAAGTTCAATATCTGCGAAAAGCTGGCCCAGCTCATGCATGGGAATTTATCAGTTGGTCCCACCTCTCAAGGTGTGGTTTGGAGTATGAACTTAACAATCAGATTACAGCTCCAACGATCATCAGGGCATCTTATTCAGCCGAGGTGCATGGATCCTGAAACCGCTAGATGCCTATTGAAAGGAATGAATACCCTCCTTGTAGATAGTGATGGTTTCAACCAATCCATTACAAGAAAGCTTTTCGAAAATTTGGGATGTCATCTAGCAGTTGTGACCTCTTGGCATCAATGTTTAGAATCTCGTCACCTAAGCGGAAATAGCTATCACCTCTTATTAATAGACCTGAGCATACTTGAGGAAGACAGACTCCAGGTGCTTATAAGAAAATTAAGATTGGAGAGTTGGCTTTTAATTATTGCATTGACGTCGAAATCTGACAGGAATACCCGGGATAGGTGTCTTCAAAATGGAATCCATGGGGTTATATGCAAACCAGTTATACTGCAAGAGATGGAAGACGAATTGCAGAGAATTTTTCGGAAAGCAGCACCGGTAGTCTCCCCCCCTTTTAATAGTGATCAGAAGGATTAA 2217 0.4709 MLSCACDDDVAGGLWTVDNILQCQKVSDFLIALAYFSIPLELFYFVSCSIIFPFRWVLTQFGAFIVLCGLTHFVTVWTYTFNSFHVMLTLTVLKFLTALVSCATSITLVTLIPQVLKVMVREGLLMKKTRDLDREVGLMKRQEEASWHVRMLTQEIRRSLDRHKILYTTLVELSKVLFLENCAIWMPDGVDSAMNLTHELKRRDDLVSIPVDDPELMEIVGERGVQILGLDSRLRRLAGRGAGVAIRMPMLRVSNFKGGTPEMVKACYAVLVLVLPQEGNREWSSQELDIVEVVADQVAVALSHAAVLEESLLMREKLLEQNMALQKARKMALMANEARCSFQKVMSREMIVPGRSIASILSVLQLETLRSEQQRKIVDTMAKGSLLLSALIEDATGVSGLGDSRLELKLRTFSLRSMLKEAAGVSKLIRACRGLNFDFQVSEEVPDRVIGDETRILQAILYMVGKVSGFGACGTIVFRVCTEDGSQGSLDSKYLTWKQTMCEEFAHLRFEVSRTNSKEDGSSFLVQKDDEKCGDEADNKGLKFNICEKLAQLMHGNLSVGPTSQGVVWSMNLTIRLQLQRSSGHLIQPRCMDPETARCLLKGMNTLLVDSDGFNQSITRKLFENLGCHLAVVTSWHQCLESRHLSGNSYHLLLIDLSILEEDRLQVLIRKLRLESWLLIIALTSKSDRNTRDRCLQNGIHGVICKPVILQEMEDELQRIFRKAAPVVSPPFNSDQKD* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01848 738 Gene3D - 139 303 IPR029016 -
Eupl01g01848 738 SMART REC_2 604 717 IPR001789 GO:0000160
Eupl01g01848 738 SUPERFAMILY CheY-like 602 722 IPR011006 -
Eupl01g01848 738 SUPERFAMILY GAF domain-like 164 305 - -
Eupl01g01848 738 Gene3D - 304 401 - -
Eupl01g01848 738 SMART gaf_1 161 312 IPR003018 GO:0005515
Eupl01g01848 738 Pfam Response regulator receiver domain 607 716 IPR001789 GO:0000160
Eupl01g01848 738 ProSiteProfiles Response regulatory domain profile. 605 721 IPR001789 GO:0000160
Eupl01g01848 738 Pfam GAF domain 161 302 IPR003018 GO:0005515
Eupl01g01848 738 Gene3D - 596 725 - -
Eupl01g01848 738 Gene3D - 404 583 IPR036890 -
Eupl01g01848 738 PIRSF Ethylen_sen_hybr_HK 1 728 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Eupl01g01848 738 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 3 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01848 Eupl-Chr1 40427643 40432204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01848 2 725 Miscellaneous Gene Families AT3G04580 45.127 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Eupl01g01848 GAF 1.7e-09 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01848 K14509 - nnu:104597117 1021.92